Gene Information

Name : Nham_0640 (Nham_0640)
Accession : YP_575988.1
Strain : Nitrobacter hamburgensis X14
Genome accession: NC_007964
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 701735 - 702436 bp
Length : 702 bp
Strand : +
Note : -

DNA sequence :
ATGAGTGCACGCATTCTGGTGGTCGAGGACGAAGAGGCGCTGACGACGCTGCTGCGCTATAATCTCGACGCCGAAGGTTA
CGAGGTTGAAACGGTGGCGCGCGGCGACGAGGCCGATACGTGGCTGAAGGAGCGCACCCCCGACCTTGTGGTGCTGGACT
GGATGCTGCCGGGCCTGTCCGGCATCGAACTGTGCCGCCGTCTGCGGGCGCGCCCCGAGACCAGGCAGCTTCCGATCATC
ATGCTTACCGCCCGCGGCGAGGAGAGCGAGCGGGTGCGGGGACTTGCGACCGGCGCCGACGACTACGTCGTCAAGCCGTT
CTCGGTGCCGGAGCTTCTGGCGCGGGTGAAGGGGCTGCTGCGGCGCGCGAGCCCGGAGCGGCTCGCCACGATCCTGAGCT
TTGGCGATATCGAGCTCGATCGCGACAAGCATCGCGTCGCGCGTTCCGGCCGCCCGATCGATCTCGGTCCGACCGAGTAT
CGCCTGCTGGAATTCTTTCTGGAGCATCCGGGCCGGGTGTTCAGCCGCGAGCAATTGCTCGACAGCGTCTGGGGCCGCGA
CATCTACATCGACGAGCGCACCGTGGACGTTCATATCGGGCGGCTGCGCAAGCTGATCAATCCCGGCGGCGAGCCGGATC
CGATCCGCACGGTGCGCGGCGCGGGCTACGCGCTGGATGAGCGCTTCGCGAAGGCGGAATAG

Protein sequence :
MSARILVVEDEEALTTLLRYNLDAEGYEVETVARGDEADTWLKERTPDLVVLDWMLPGLSGIELCRRLRARPETRQLPII
MLTARGEESERVRGLATGADDYVVKPFSVPELLARVKGLLRRASPERLATILSFGDIELDRDKHRVARSGRPIDLGPTEY
RLLEFFLEHPGRVFSREQLLDSVWGRDIYIDERTVDVHIGRLRKLINPGGEPDPIRTVRGAGYALDERFAKAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-35 45
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-35 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nham_0640 YP_575988.1 two component transcriptional regulator AE000516.2.gene3505. Protein 4e-37 45
Nham_0640 YP_575988.1 two component transcriptional regulator NC_002952.2859905.p0 Protein 1e-42 44
Nham_0640 YP_575988.1 two component transcriptional regulator NC_013450.8614421.p0 Protein 2e-42 44
Nham_0640 YP_575988.1 two component transcriptional regulator NC_007793.3914279.p0 Protein 2e-42 44
Nham_0640 YP_575988.1 two component transcriptional regulator NC_003923.1003749.p0 Protein 2e-42 44
Nham_0640 YP_575988.1 two component transcriptional regulator NC_007622.3794472.p0 Protein 1e-42 44
Nham_0640 YP_575988.1 two component transcriptional regulator NC_002745.1124361.p0 Protein 2e-42 44
Nham_0640 YP_575988.1 two component transcriptional regulator NC_009782.5559369.p0 Protein 2e-42 44
Nham_0640 YP_575988.1 two component transcriptional regulator NC_002951.3237708.p0 Protein 2e-42 44
Nham_0640 YP_575988.1 two component transcriptional regulator NC_002758.1121668.p0 Protein 2e-42 44
Nham_0640 YP_575988.1 two component transcriptional regulator NC_009641.5332272.p0 Protein 2e-42 44
Nham_0640 YP_575988.1 two component transcriptional regulator NC_010400.5986590.p0 Protein 1e-37 43
Nham_0640 YP_575988.1 two component transcriptional regulator NC_011595.7057856.p0 Protein 3e-38 43
Nham_0640 YP_575988.1 two component transcriptional regulator NC_010410.6002989.p0 Protein 3e-38 43
Nham_0640 YP_575988.1 two component transcriptional regulator HE999704.1.gene2815. Protein 3e-39 42
Nham_0640 YP_575988.1 two component transcriptional regulator NC_012469.1.7685629. Protein 1e-35 42
Nham_0640 YP_575988.1 two component transcriptional regulator BAC0039 Protein 1e-35 42
Nham_0640 YP_575988.1 two component transcriptional regulator CP001138.1.gene2239. Protein 2e-35 42
Nham_0640 YP_575988.1 two component transcriptional regulator CP000034.1.gene2186. Protein 1e-35 42
Nham_0640 YP_575988.1 two component transcriptional regulator CP001918.1.gene3444. Protein 1e-35 42
Nham_0640 YP_575988.1 two component transcriptional regulator NC_002695.1.916589.p Protein 9e-36 42
Nham_0640 YP_575988.1 two component transcriptional regulator BAC0596 Protein 2e-35 42
Nham_0640 YP_575988.1 two component transcriptional regulator NC_008702.1.4607594. Protein 5e-37 41
Nham_0640 YP_575988.1 two component transcriptional regulator CP000647.1.gene2531. Protein 8e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nham_0640 YP_575988.1 two component transcriptional regulator VFG1390 Protein 2e-40 46
Nham_0640 YP_575988.1 two component transcriptional regulator VFG1702 Protein 5e-36 45
Nham_0640 YP_575988.1 two component transcriptional regulator VFG1563 Protein 2e-35 44
Nham_0640 YP_575988.1 two component transcriptional regulator VFG1386 Protein 7e-36 42
Nham_0640 YP_575988.1 two component transcriptional regulator VFG1389 Protein 9e-31 42