Gene Information

Name : Nham_0998 (Nham_0998)
Accession : YP_576308.1
Strain : Nitrobacter hamburgensis X14
Genome accession: NC_007964
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1109466 - 1110128 bp
Length : 663 bp
Strand : -
Note : -

DNA sequence : 
ATGCGTATTCTCTTGGTTGAAGACGACCAAATGGTTGGGGCGGCGGTGACGCAGGCGCTCAAAGATGCCGCCTATGCGGT
GGATTGGGTCAAAGACGGCCAAACTGCGATCGAAGCTGCGCGTGCGGAAACCTACGATCTCACATTGCTCGATCTCGGAT
TGCCATCTCGGGACGGCACCGAAGTGCTGCGTGCCTTCCGGACGATGAATCGGCAGTTGCCCGTCATCATCGTGACTGCC
CGCGATGCGATCGACGACCGTATCCACGGACTCGATCTCGGCGCGGACGATTACCTCGTCAAGCCTTTCGAAATCCGGGA
ACTGCTCGCACGTATGCGAGCCATCCTGCGGCGGCAGGGCAGCGGCAATGCGGCGATCCTGAGCAATGGCACGATAAGTC
TCGATCCGGCGACCCACGAGGTCGCTCACGGTGGCGGCGCTGCGCGCCTGACGGCACGGGAGTTCGCTCTCCTTCAGGCT
CTCATGCTTCGCCCGGGCACGATCCTGTCGCGGGTTGATCTTGAACGGCACATCTACGGTTGGAACGAGGAGGTCGAGAG
CAACGCTGTGGAGTTCCTGATCCATGCGATCCGCAAAAAGCTCGGAGCGTCGTCGATCCGCAACGTCAGGGGCGTCGGCT
GGATGGTCGATCGATCATGTTGA

Protein sequence : 
MRILLVEDDQMVGAAVTQALKDAAYAVDWVKDGQTAIEAARAETYDLTLLDLGLPSRDGTEVLRAFRTMNRQLPVIIVTA
RDAIDDRIHGLDLGADDYLVKPFEIRELLARMRAILRRQGSGNAAILSNGTISLDPATHEVAHGGGAARLTAREFALLQA
LMLRPGTILSRVDLERHIYGWNEEVESNAVEFLIHAIRKKLGASSIRNVRGVGWMVDRSC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-35 44
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-31 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nham_0998 YP_576308.1 two component transcriptional regulator NC_013450.8614146.p0 Protein 6e-31 41
Nham_0998 YP_576308.1 two component transcriptional regulator NC_002951.3238224.p0 Protein 6e-31 41
Nham_0998 YP_576308.1 two component transcriptional regulator NC_007793.3914065.p0 Protein 6e-31 41
Nham_0998 YP_576308.1 two component transcriptional regulator NC_002758.1121390.p0 Protein 6e-31 41
Nham_0998 YP_576308.1 two component transcriptional regulator NC_010079.5776364.p0 Protein 6e-31 41
Nham_0998 YP_576308.1 two component transcriptional regulator NC_002952.2859858.p0 Protein 6e-31 41
Nham_0998 YP_576308.1 two component transcriptional regulator NC_007622.3794948.p0 Protein 6e-31 41
Nham_0998 YP_576308.1 two component transcriptional regulator NC_003923.1003417.p0 Protein 6e-31 41
Nham_0998 YP_576308.1 two component transcriptional regulator BAC0487 Protein 5e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nham_0998 YP_576308.1 two component transcriptional regulator VFG0473 Protein 4e-40 44
Nham_0998 YP_576308.1 two component transcriptional regulator VFG0596 Protein 1e-31 42