Gene Information

Name : Csal_0717 (Csal_0717)
Accession : YP_572777.1
Strain : Chromohalobacter salexigens DSM 3043
Genome accession: NC_007963
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 804725 - 806125 bp
Length : 1401 bp
Strand : +
Note : -

DNA sequence : 
GTGAAGCACGCCGCCGCGCATATTCTGCTGGTCGATGACGACCCCAGCCTGCTCAAGTTGCTGGGCATGCGCCTGGAAAG
CCGAGGCTACCGCGTGACCACCGCCGAGAGTGGACGCCAGGCACTGGACTGCCTGACCGAGGACCGCCCCGACCTGGTGC
TCTCCGACCTGCGCATGGACGAAATGGACGGCATGGCACTGTTTCACGAATTGCAGCGCCGCGCGCCGGGCATGCCGGTG
ATCATTCTCACCGCGCACGGCTCCATCCCGGATGCGGTGAGCGCCACGCGCCAGGGGGTGTTCAGCTTTCTCACCAAGCC
GGTGGACCGCGACGAGCTGTTCGCCGCCATCGAGGAAGCCATGGCGCAGACGGCGAGCACCCACGGGGCCGGCGACGATG
CCTGGCGTGCCGAGATCATCACCCGCAGCCCGCAGATGGAACGCATCCTCGAGCAGGCCCGCATGGTGGCGGCTTCGGAT
GTCAGCGTGCTGATCACCGGGGCCTCCGGCTCGGGCAAGGAGCTGCTGGCCAACGCCATCCACCAGGCGAGCGGACGCGC
CGACAAGCCCTTCGTGGCGATCAACTGCGGCGCGCTGCCCGAGCAGTTGCTGGAAAGCGAGCTGTTCGGGCACGCCAAGG
GCGCCTTCACCGGTGCGGTGAGCCAGCACGAGGGGCTGTTCCTCGCCGCCAACGGCGGCAGCCTGTTCCTCGACGAGATC
GGCGACATGCCGCTGACGCTGCAGGTCAAATTGTTGCGCGCGCTGCAGGAACGTCAGATTCGCCCCCTGGGCTCGACCAC
TTCGGTGCCCATCGACGTGCGCATCATCTCCGCCACGCACCGCGACCTCGACCGCGCCATGCACGAGGGCGACTTCCGTG
AGGACCTTTATTACCGCCTCAACGTCGTCAACCTCAAGCTGCCGGCCCTCAAGGAGCGTGCCGAGGACGTGCCGTTGCTG
GCCAAGTATCTGGTGGGACAGGCGGCAGAGCGCCACAAGCCCTTCGTCAAGGGCTTCTCGTCGGAGGCGCTCAACCTGCT
GGCCTCCAGCGCCTGGCCGGGCAACGTGCGCCAGCTGGTCAACGTGGTCGAGCAGTGCGTGGCGCTGACCAGCTCGCCGA
TCATCCCCGAGGCCCTGGTGGCCCAGGCGCTGGCGGCCGAGGAAAACGCGCTGCCCTCGTTCAACGAGGCGCGCGCGGGC
TTCGAACGCAGCTATCTCGTCAAGGTGCTGAAGATCACCGAGGGCAACGTTACCCAGGCCGCGCGCATCGCCGGGCGCAA
CCGCACCGACTTCTACAAGCTGCTGGCGCGCCACGACCTGGAACCGAGCAGCTTCAAGCCGAGCACCCACTCGCAGTCGG
CACAGAACGACGACGCCGCACCACGCCGCGCCCAGCGCTGA

Protein sequence : 
MKHAAAHILLVDDDPSLLKLLGMRLESRGYRVTTAESGRQALDCLTEDRPDLVLSDLRMDEMDGMALFHELQRRAPGMPV
IILTAHGSIPDAVSATRQGVFSFLTKPVDRDELFAAIEEAMAQTASTHGAGDDAWRAEIITRSPQMERILEQARMVAASD
VSVLITGASGSGKELLANAIHQASGRADKPFVAINCGALPEQLLESELFGHAKGAFTGAVSQHEGLFLAANGGSLFLDEI
GDMPLTLQVKLLRALQERQIRPLGSTTSVPIDVRIISATHRDLDRAMHEGDFREDLYYRLNVVNLKLPALKERAEDVPLL
AKYLVGQAAERHKPFVKGFSSEALNLLASSAWPGNVRQLVNVVEQCVALTSSPIIPEALVAQALAAEENALPSFNEARAG
FERSYLVKVLKITEGNVTQAARIAGRNRTDFYKLLARHDLEPSSFKPSTHSQSAQNDDAAPRRAQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-64 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-64 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Csal_0717 YP_572777.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0467 Protein 1e-82 46
Csal_0717 YP_572777.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0089 Protein 8e-77 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Csal_0717 YP_572777.1 two component, sigma54 specific, Fis family transcriptional regulator VFG1249 Protein 2e-60 42
Csal_0717 YP_572777.1 two component, sigma54 specific, Fis family transcriptional regulator VFG0116 Protein 3e-61 41