|
Name : lysS (Csal_2997) Accession : YP_575041.1 Strain : Chromohalobacter salexigens DSM 3043 Genome accession: NC_007963 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 3333942 - 3335450 bp Length : 1509 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGGCCAACCAAGACGCCGCTCAACACGACGAGAATCATCTGATCGCGGAACGCCGTGCCAAGCTGGCGGCGCGCCGCGA CCAAGCCGCGGAAGCCGGGGGCAGCGCCTTTCCCAACGACTTTCGCCGCGACAGCCTCGCCGCCGAACTTCAGGCCGAGC TGGGCGACAAGGACAAGGCCGAGCTGGAAACGCTCGACCGCCGGGCCTCGGTGGCCGGGCGCATCATGCGCAAGCGCGGG CCCTTCATCGTCATTCAGGACGTCTCCGACCAGATCCAGCTCTACGTCGACAAGAAAGGGCTGCCCGCGGAGACCCTCGA CGACATCAAGAGCTGGGATATCGGCGACATCGTCGCGGCCCGCGGGCCGGTGCACAAGTCCGGCAAGGGTGACCTCTACG TCATGATGGGCGAGGCGCAACTGCTGACCAAGAGCCTGCGTCCCCTGCCCGACAAGTACCACGGCCTGACCGATACCGAG GCCCGCTACCGCCAGCGCTATGTCGACCTGATCATGAACCCCGAGTCGCGTCGCGTCTTCGAGGTGCGTTCGCGTGTAAT CAGCGGCATTCGGCGTTTTCTGGTCGAGCGCGGCTTCATGGAAGTCGAGACGCCGATGCTGCAGCAGATTCCCGGCGGCG CCACGGCAAGGCCTTTCGTCACGCATCACAACGCGCTGGATATCGACATGTACCTGCGCGTCGCCCCCGAGCTGTATCTC AAGCGCCTGGTCGTCGGTGGCTTCGAGCGGGTCTTCGAGATCAACCGCAACTTCCGCAACGAGGGATTGTCGACCCGTCA CAATCCCGAGTTCACGATGCTCGAGTTCTACTGGGCCTACGCCGATTACCGTGACCTGCTGGATCTCACCGAAGCGATGA TTCGCGACGTCGCGCACGAGGTGCTGGGCACGACCACGGTCGAGTATCAGGGGGCACGCTACGAACTCGGCGAGCCGTTC CAGCGGCTCACGCTGCGGCAGTCGATCCTCGAGTACGGCGACGGTCTCGGCGAAAGCGACATCGACACGTTCGATGGCGC GCGTGCCACCTGCGAGCGTCTGGGCATTCCCGTCAAGCCGAGCTGGGGGCTGGGCAAGTTGCAGACCGAGATCTTCGAGG CCGTCGCCGAAGACAAGCTCGACCGCCCGACGTTCATTACCGAATACCCGGCCGAGGTCAGTCCGCTGGCGCGGCGCAAC GATACCAATCCCCATGTGACCGATCGCTTCGAGTTCTTCGTCGGCGGCCGCGAGCTCGCCAATGGCTTCTCGGAGCTCAA CGACGCCGAGGACCAGGCCGAACGCTTCGCCGCCCAGGCGGCGGAGAAGGATGCCGGCGACCTCGAGGCGATGTACTACG ATGCCGACTACGTACGCGCGCTGGAGTACGGCATGCCGCCGACCGCGGGTGAGGGGATCGGCATCGACCGGCTGGTCATG CTGCTCACCGATAGCCCGTCGATCCGGGATGTGTTGTTGTTCCCGGCGATGCGTCCCTCGGCCGACTGA Protein sequence : MANQDAAQHDENHLIAERRAKLAARRDQAAEAGGSAFPNDFRRDSLAAELQAELGDKDKAELETLDRRASVAGRIMRKRG PFIVIQDVSDQIQLYVDKKGLPAETLDDIKSWDIGDIVAARGPVHKSGKGDLYVMMGEAQLLTKSLRPLPDKYHGLTDTE ARYRQRYVDLIMNPESRRVFEVRSRVISGIRRFLVERGFMEVETPMLQQIPGGATARPFVTHHNALDIDMYLRVAPELYL KRLVVGGFERVFEINRNFRNEGLSTRHNPEFTMLEFYWAYADYRDLLDLTEAMIRDVAHEVLGTTTVEYQGARYELGEPF QRLTLRQSILEYGDGLGESDIDTFDGARATCERLGIPVKPSWGLGKLQTEIFEAVAEDKLDRPTFITEYPAEVSPLARRN DTNPHVTDRFEFFVGGRELANGFSELNDAEDQAERFAAQAAEKDAGDLEAMYYDADYVRALEYGMPPTAGEGIGIDRLVM LLTDSPSIRDVLLFPAMRPSAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-139 | 60 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 1e-80 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_575041.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-139 | 60 |
