Gene Information

Name : fliP (Csal_1965)
Accession : YP_574016.1
Strain : Chromohalobacter salexigens DSM 3043
Genome accession: NC_007963
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2221136 - 2221885 bp
Length : 750 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAACGTCGCTGTCATGCTGCGTTGCGGACTCGCCGTATTGCTGCTGGCCTGGCCGGCCTTCGGTTGGGGGCAGGAAAT
TTCCGGCATCGTCAGCGAGCCCACCGGCGATGGCGGCCAGCAATGGTCGCTGAGCCTGCAGACGCTGCTGTTTCTCAGCT
CGCTGGCCTTCCTGCCGGCGCTGCTGCTGGGCATGACCTGCTTTACGCGCATCATCATCGTGCTCAGCCTGTTGCGCACC
GCGATCGGTACCCAATCGACGCCGCCCAATCAGGTGCTCCTCGGCCTGGCGCTCTTCATGACCTTCTTCATCATGTCGCC
GGTGCTGGATCGCGTGCACGAGCAGGCCTGGGTGCCCTTCTCCGAGGAGCGGATCAGCCTCGAGCAAGCCCTGGAACAGG
GCAGTCAGCCGTTCCGGGAGTTCATGTTCGGCCAGACCCGTGAAACCGATCTGGCGCTCTTCGCGCGCATGGCCGACGCC
GATGAAATGCAGGGCCCCGAAGACGTCCCGATGCGTCTGCTGATACCGGCCTTTTTGACCAGCGAGCTGAAGACGGCATT
CCAGATCGGGTTCAGCATCTTCATCCCCTTCTTGATCATCGATCTCGTGGTGGCCAGTGTCCTGATGGCACTGGGGATGA
TGATGGTGCCGCCCGCGACCATCTCGCTGCCCTTCAAGCTGATGCTGTTCGTGCTCGTCGACGGCTGGCAGTTATTGATC
GGCTCCCTGGCCGAAAGCTTCTACATGTAA

Protein sequence : 
MNVAVMLRCGLAVLLLAWPAFGWGQEISGIVSEPTGDGGQQWSLSLQTLLFLSSLAFLPALLLGMTCFTRIIIVLSLLRT
AIGTQSTPPNQVLLGLALFMTFFIMSPVLDRVHEQAWVPFSEERISLEQALEQGSQPFREFMFGQTRETDLALFARMADA
DEMQGPEDVPMRLLIPAFLTSELKTAFQIGFSIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLI
GSLAESFYM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-26 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-26 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-26 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-26 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-21 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-21 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-21 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 9e-21 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 9e-21 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-21 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-30 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-30 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 3e-29 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-29 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-29 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-30 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-29 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-30 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-30 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_574016.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-65 75
fliP YP_574016.1 flagellar biosynthesis protein FliP VFG2338 Protein 1e-70 72
fliP YP_574016.1 flagellar biosynthesis protein FliP VFG1259 Protein 1e-56 59
fliP YP_574016.1 flagellar biosynthesis protein FliP VFG2016 Protein 3e-54 58
fliP YP_574016.1 flagellar biosynthesis protein FliP VFG0044 Protein 7e-32 41
fliP YP_574016.1 flagellar biosynthesis protein FliP VFG0188 Protein 2e-30 41