Gene Information

Name : Nham_4212 (Nham_4212)
Accession : YP_571663.1
Strain :
Genome accession: NC_007959
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 168852 - 169757 bp
Length : 906 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGCCTTCATCAGCGGTCATCGCGAGGCGCACGGGGTCGAGCCGATCTGCAAGGTCTTGCCGATCGCCCCCTCGAC
CTATTACGCCGATGTGGCCAGACGGCGCGACCCGGCCAGGCTGTCGGCACGCGCCAGGCAGGATGCCGCCATGAAGATCG
AGGTTCGACGCGTGTTCGATGAGAACTTCCGGATGTATGGCGTGCGCAAGGTCTGGCGGCAGCTCAAACGCGACGGCTTC
GATATTGCTCGTTGCGCGGTGTCGCGATTGATGCGCGACATGGGCTTGCAGGGAGCCATCCGCGGCAAATCCGTGAGAAC
CACGATGAGCGACAAAGCCGCGCCATGCCCGCTGGATCACGTCAATCGCCAGTTCAAGGCGCCTCGGCCGAATGTCCTGT
GGCTCTCCGACTTCACCTATGTCGCGACCTGGACCGGCTTCGTCTACGTCGCCTTCGTCATCGACGCCTATGCCCGCAGG
ATCGTGGGTTGGCGAGCGTCGCGCACGGCGCACGCCGGCTTCGTGCTCGATGCGCTGGAGCAGGCCCTGCATGATCGGCG
GCCGGTCCATCGCGGCGGGCTCGTGCACCACAGCGACAGGGGCAGCCAATACGTATCCATCAGGTACACCGAGTGCCTGA
CTGAGGCTGGCATCGAGCCGTCGGTCGGCAGTGTCGGAGATTCCTATGACAACGCTCTCGCCGAAACCATCAACGGTCTC
TACAAGGCCGAAGTGATCCATCGGCGCGGACCGTGGCGCAGCTTCGAGGCCGTCGAGTTCGCCACTCTCGAATGGATCGA
CTGGTTCAACAACCGAAGGCTGCTGGAGCCCATCGGCAACATCCCGCCGGCCGAAGCCGAGCAACGCTACTACGCTATGC
TGGAGCAACCAGGCATGGCGGCGTAA

Protein sequence : 
MIAFISGHREAHGVEPICKVLPIAPSTYYADVARRRDPARLSARARQDAAMKIEVRRVFDENFRMYGVRKVWRQLKRDGF
DIARCAVSRLMRDMGLQGAIRGKSVRTTMSDKAAPCPLDHVNRQFKAPRPNVLWLSDFTYVATWTGFVYVAFVIDAYARR
IVGWRASRTAHAGFVLDALEQALHDRRPVHRGGLVHHSDRGSQYVSIRYTECLTEAGIEPSVGSVGDSYDNALAETINGL
YKAEVIHRRGPWRSFEAVEFATLEWIDWFNNRRLLEPIGNIPPAEAEQRYYAMLEQPGMAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 3e-58 64
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-61 64
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-61 63
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 5e-72 63
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 8e-80 60
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-78 60
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-81 60
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-81 60
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-81 60
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 6e-82 60
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-79 59
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-79 59
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-79 59
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-81 59
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-79 59
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-79 59
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-79 59
Z1221 NP_286756.1 transposase Not tested TAI Protein 6e-80 59
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-56 59
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 5e-80 58
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-77 58
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 7e-80 58
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 9e-55 47
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 3e-42 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nham_4212 YP_571663.1 integrase catalytic subunit VFG1602 Protein 1e-77 58