Gene Information

Name : fliI (RPD_3671)
Accession : YP_570795.1
Strain : Rhodopseudomonas palustris BisB5
Genome accession: NC_007958
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 4098085 - 4099410 bp
Length : 1326 bp
Strand : -
Note : involved in type III protein export during flagellum assembly

DNA sequence : 
ATGAAGGCCTTGGCCGAGCAGATCGGCGATATCGACGGCGTCAACATTTATGGTCGGGTCGTTGGCGTCCGCGGCCTGAT
GGTCGAGATTGCCGGCCCGATCCACGCGATGTCGGTCGGCGCCAGAATCGTTGTAGAAACAGGGGCAAGCAGGACAATCC
CCTGCGAGGTGATCGGGTTCACCGGCAACAATGCGATGGTGATGCCGTTCGCCGGGCTTGAGGGCGTGCGGCGCGGCTGT
CGCGCGGTGATCGCCAATTCCGCAGCGCAGGTGCGGCCGTCGCCGGCCTGGCTCGGCCGCGTCATTAACGCTCTCGGCGA
GCCGATCGACGGCAAGGGGCCGCTGCCGCAGGGGGCGTCGCCGATGCCGTTTCGCAATTCGCCGCCGCCGGCGCATTCGC
GCAAGCGGGTCGGCGCGCCGCTCGATCTCGGCGTCCGTGCGCTCAACACCTTTCTCACCTGCTGCCGCGGCCAGCGGATG
GGCATCTTCGCCGGTTCCGGCGTCGGCAAGTCGGTGCTGCTGTCGATGCTGGCGCGCAACGTCGATGCGGCGGTCTCGGT
GATCGGGCTGATCGGCGAACGCGGCCGCGAAGTGCAGGAGTTCCTGCAGGACGATCTCGGCGAGGAGGGGCTTGCGCGCT
CGGTCGTGGTGGTGGCGACCTCCGACGAGCCAGCGCTGATGCGCCGCCAGGCCGCTTATCTCACGCTGTCGATCGCCGAG
TATTTTCGCGACGAGGGCAAGGACGTGCTGTGCCTGATGGATTCGGTCACGCGTTTCGCGATGGCGCAGCGCGAGATCGG
CTTGTCCGCCGGCGAGCCGCCGACCGCGAAGGGCTACACGCCGACCGTGTTCACGGAACTGCCGAAGCTGCTGGAGCGCG
CCGGGCCTGGACTCCGCGAAGGAACGATCAGCGGCATCTTCACCGTCCTGGTCGACGGCGACGATCACAACGAGCCGGTC
GCGGACGCAGTGCGCGGCATTCTCGACGGCCACATCGTGATGCAGCGCTCGATCGCCGAGCGCGGCCGCTATCCGGCGAT
CAACGTGCTCAAATCGGTGTCGCGAACCATGCCGCGTTCTGCCGATCCGGCCTATCTGCCGGTGATCAAGCGCGCGCGGC
AGGTGATGGCGACCTACGCCGACATGGAGGAGCTGATCCGTCTCGGGGCCTATCGGCCGGGTTCGAGCGTCGAAGTCGAC
GAGGCGGTCCGGCTTCACGAGCCGCTCGAGGAGTTCCTGCGGCAGGCGAAAGACGAGGCCACCAGCCTTTCCTCAGGTTA
TGCCCAACTTGAACAAATCCTGAAGACCGTGGAAACGGAACGCTAA

Protein sequence : 
MKALAEQIGDIDGVNIYGRVVGVRGLMVEIAGPIHAMSVGARIVVETGASRTIPCEVIGFTGNNAMVMPFAGLEGVRRGC
RAVIANSAAQVRPSPAWLGRVINALGEPIDGKGPLPQGASPMPFRNSPPPAHSRKRVGAPLDLGVRALNTFLTCCRGQRM
GIFAGSGVGKSVLLSMLARNVDAAVSVIGLIGERGREVQEFLQDDLGEEGLARSVVVVATSDEPALMRRQAAYLTLSIAE
YFRDEGKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAGPGLREGTISGIFTVLVDGDDHNEPV
ADAVRGILDGHIVMQRSIAERGRYPAINVLKSVSRTMPRSADPAYLPVIKRARQVMATYADMEELIRLGAYRPGSSVEVD
EAVRLHEPLEEFLRQAKDEATSLSSGYAQLEQILKTVETER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 4e-86 46
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-71 46
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-72 46
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-71 46
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-72 46
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-72 46
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-79 45
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-79 45
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 3e-81 45
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 3e-81 45
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-81 45
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 2e-73 45
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-80 44
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-81 44
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-71 44
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-71 44
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 2e-80 43
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-80 43
escN AAC38383.1 EscN Virulence LEE Protein 7e-72 43
unnamed AAL06369.1 EscN Virulence LEE Protein 5e-72 42
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-71 42
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 5e-72 42
escN NP_290268.1 hypothetical protein Virulence LEE Protein 6e-72 42
escN CAI43874.1 EscN protein Virulence LEE Protein 1e-71 42
ECs4568 NP_312595.1 EscN Virulence LEE Protein 6e-72 42
escN CAC81862.1 EscN protein Virulence LEE II Protein 1e-71 42
escN YP_003236088.1 translocator EscN Virulence LEE Protein 6e-72 42
escN YP_003223475.1 translocator EscN Virulence LEE Protein 2e-71 42
escN AAC31513.1 L0034 Virulence LEE Protein 5e-72 42
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 4e-58 41
escN AAL57542.1 EscN Virulence LEE Protein 3e-71 41
escN AAK26715.1 EscN Virulence LEE Protein 3e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_570795.1 flagellum-specific ATP synthase VFG2144 Protein 4e-88 47
fliI YP_570795.1 flagellum-specific ATP synthase VFG0192 Protein 1e-83 46
fliI YP_570795.1 flagellum-specific ATP synthase VFG0515 Protein 7e-73 46
fliI YP_570795.1 flagellum-specific ATP synthase VFG2499 Protein 1e-82 46
fliI YP_570795.1 flagellum-specific ATP synthase VFG0048 Protein 3e-85 45
fliI YP_570795.1 flagellum-specific ATP synthase VFG1254 Protein 8e-83 45
fliI YP_570795.1 flagellum-specific ATP synthase VFG0390 Protein 2e-83 44
fliI YP_570795.1 flagellum-specific ATP synthase VFG2331 Protein 2e-79 43
fliI YP_570795.1 flagellum-specific ATP synthase VFG0730 Protein 4e-72 43
fliI YP_570795.1 flagellum-specific ATP synthase VFG0812 Protein 3e-72 42