Gene Information

Name : RPD_3124 (RPD_3124)
Accession : YP_570251.1
Strain : Rhodopseudomonas palustris BisB5
Genome accession: NC_007958
Putative virulence/resistance : Resistance
Product : Beta-lactamase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2602
EC number : 3.5.2.6
Position : 3476063 - 3476878 bp
Length : 816 bp
Strand : -
Note : -

DNA sequence : 
GTGATTACTCGCCGTTCCGCACTCGGCCTTTGCGCCGCCGCACTGCTACCCGCCCGCGCTTTCGCCGAGGTCGCGCCGCC
ACGCAGTGAAATCCGCACCAGCCTCGCCAAGCGCTTCGCCGATGAAGGCACCGCGGGCACTTTCGTCGGCTACAAGACCG
ACGACTATCTGATCATCGCCAGCGATGCGCAGCGATCGGGCGATCCGTTCCTGCCGGCCTCGACGTTCAAAGTGCCGAAC
TCGTTGATCGCGCTCGAGACCGGCGTCGTCGCCGATCCCGACAAGGACATTTTCAAATGGGACGGCGTGACGCGTAGCAT
CGAGGCGTGGAATCGCGATCACACGCTCCGTTCTGCGATCGCTACTTCCGCGGTGCCTGTGTATCAGGAGATCGCGCGCC
GGATCGGACAGGAGCGGATGCAGAAATATGTCGATCTGTTCGAATACGGCAACCGCAACATCGGCGGCGGCATCGATCAG
TTCTGGCTGACGGGCGATCTGCGCATCGACTGCATCCAGCAGATCGACTTCATCGACCGTCTACGCCGCCGCGTCCTGCC
GATCTCAAAGCGCAGCCAGGATCTGGTCGCCGACATCCTGCCGGTGACCAAAGTGGGCGAGGCCGTCATCCGCGCCAAGA
CCGGGTTGCTCGGAGCGGAGAAGGGGCAGCCTTCGCTCGGTTGGCTTGTCGGCTGGGCCGAGAAGGGCCAGGAGCAGACC
GTGTTCGCGCTCAACCTGGATGCTCGCGAGCCGCGCCATGCGGCCGCCCGGATGACGCTGGCGCAGCAACTGCTGTCGGA
CATCGGCGCGATCTGA

Protein sequence : 
MITRRSALGLCAAALLPARAFAEVAPPRSEIRTSLAKRFADEGTAGTFVGYKTDDYLIIASDAQRSGDPFLPASTFKVPN
SLIALETGVVADPDKDIFKWDGVTRSIEAWNRDHTLRSAIATSAVPVYQEIARRIGQERMQKYVDLFEYGNRNIGGGIDQ
FWLTGDLRIDCIQQIDFIDRLRRRVLPISKRSQDLVADILPVTKVGEAVIRAKTGLLGAEKGQPSLGWLVGWAEKGQEQT
VFALNLDAREPRHAAARMTLAQQLLSDIGAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
bla OXA-129 AFG30109.1 OXA-129 beta-lactamase Not tested PAGI-2 Protein 1e-49 44
blaOXA-129 AET25386.1 OXA-129 beta-lactamase Not tested PAGI-2(C) Protein 1e-49 44
bla OXA-10 CAJ77047.1 Oxacillinase Not tested AbaR1 Protein 5e-47 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPD_3124 YP_570251.1 Beta-lactamase X75562.1.gene1.p01 Protein 1e-47 44
RPD_3124 YP_570251.1 Beta-lactamase AM932669.1.gene2.p01 Protein 8e-50 44
RPD_3124 YP_570251.1 Beta-lactamase X58272.1.gene1.p01 Protein 3e-49 43
RPD_3124 YP_570251.1 Beta-lactamase JN205800.1.gene6.p01 Protein 9e-44 43
RPD_3124 YP_570251.1 Beta-lactamase U37105.2.gene2.p01 Protein 3e-47 42
RPD_3124 YP_570251.1 Beta-lactamase U59183.1.gene3.p01 Protein 1e-47 42
RPD_3124 YP_570251.1 Beta-lactamase AJ854182.1.gene1.p01 Protein 7e-47 42
RPD_3124 YP_570251.1 Beta-lactamase NC_010410.6002874.p0 Protein 3e-47 42
RPD_3124 YP_570251.1 Beta-lactamase Z22590.1.gene1.p01 Protein 1e-46 42
RPD_3124 YP_570251.1 Beta-lactamase AM412777.1.gene1.p01 Protein 1e-47 42
RPD_3124 YP_570251.1 Beta-lactamase AY445080.1.gene1.p01 Protein 1e-47 42
RPD_3124 YP_570251.1 Beta-lactamase HM015773.1.gene6.p01 Protein 1e-43 42
RPD_3124 YP_570251.1 Beta-lactamase AY343493.1.gene1.p01 Protein 1e-40 42
RPD_3124 YP_570251.1 Beta-lactamase AF231133.1.gene3.p01 Protein 5e-45 41
RPD_3124 YP_570251.1 Beta-lactamase AY500137.1.gene1.p01 Protein 1e-43 41
RPD_3124 YP_570251.1 Beta-lactamase HQ700343.1.gene1.p01 Protein 4e-42 41