|
Name : RPD_3004 (RPD_3004) Accession : YP_570131.1 Strain : Rhodopseudomonas palustris BisB5 Genome accession: NC_007958 Putative virulence/resistance : Resistance Product : major facilitator transporter Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 3348891 - 3350156 bp Length : 1266 bp Strand : - Note : - DNA sequence : ATGACCGACGAGGAGCAACCTCCCGGGACGATCGCGCCGCTCCCGGGCGCGCGCCCCGCCGCGGTCGGCTTCATCTTCGT CACCATCCTGCTCGATATGCTGAGCGTCGGCATGATCCTGCCGATCCTGCCGAAGCTGATCGAGAGTTTTTCCGACAACA ACACCGCGGACGCGGCGCGAATCTACGGCGTGTTCGGCACAGCGTGGGCGCTGATGCAGTTCGTCGCGTCGCCGGTGCTG GGCGGGCTGTCCGATCGTTTCGGCCGCCGCCCGGTGATCCTGCTGTCCAATCTCGGTCTCGGTCTCGACTACATCCTGAT GGCGCTGGCGCCGACGCTGAGCTGGCTGTTCATCGGCCGGGTGATCTCCGGCATCACGTCGGCGAGTATTTCGACCTCGT TCGCCTATATCGCCGACGTCACGCCGGCGGAGAAGCGCGCGGCCGTGTTCGGCAAGGTCGGCGCCGCGTTCGGTCTCGGC TTCATCTTCGGCCCGGCGATCGGCGGTTTGCTCGGTGGTATCGATCCGCGACTGCCGTTCTGGGTGGCGGCTGGGCTCAG CCTGTGCAACGCGCTGTACGGTCTGTTCGTGCTGCCGGAATCGCTGCCGCCGGAGCGGCGCTCGCCGTTTCGCTGGAGGT CCGCCAATCCGGTCGGCGCTGTGCGGCTGCTGGGCTCGAATGCCCGGCTGGCGGCGATGGCTCTGGTCGAGTTCTGCGCC GAGGTGGCGCATGTCGCGCTGCCGGCGATCTTCGTGTTGTACAGCACCTACCGTTACGGCTGGGACCAGACCACGGTCGG GCTCGCGCTCGCTTTCGTCGGGGTCTGCACCGCGATCGTGCAGGGCGGCTTGGTGGGGCCTGCCGTGAAGCGACTCGGCG AACAAAGGGCCCAGATCATCGGCTATGGCGGCGGCGCGCTAGGCTTTCTGATCTACGCGCTGGCGCCGACCGGAGCGCTG TTCTGGATCGGCATCCCGGTGATGACGCTGTGGGGCATCGCAGGGCCGGCGACCTCCGGCATGATGACGCGGCTGGTGTC GCCGGACCAGCAGGGCCAGTTGCAGGGCGCCATCACCAGCCTCAAGAGCATCGCCGAACTGATCGGGCCGTTCCTGTTCA CGCTGATCTTCGCGTATTTCATTGGAGGCAACGCGCCGCTGGCTCTTCCCGGGGCGCCGTTCCTGCTCGCAGGCCTGCTG CTGATGGTCTCGGCGCTGATCGCCGCGTCCACCAATGAAGCGACCAAACAGGCCGGCACCGGCTAG Protein sequence : MTDEEQPPGTIAPLPGARPAAVGFIFVTILLDMLSVGMILPILPKLIESFSDNNTADAARIYGVFGTAWALMQFVASPVL GGLSDRFGRRPVILLSNLGLGLDYILMALAPTLSWLFIGRVISGITSASISTSFAYIADVTPAEKRAAVFGKVGAAFGLG FIFGPAIGGLLGGIDPRLPFWVAAGLSLCNALYGLFVLPESLPPERRSPFRWRSANPVGAVRLLGSNARLAAMALVEFCA EVAHVALPAIFVLYSTYRYGWDQTTVGLALAFVGVCTAIVQGGLVGPAVKRLGEQRAQIIGYGGGALGFLIYALAPTGAL FWIGIPVMTLWGIAGPATSGMMTRLVSPDQQGQLQGAITSLKSIAELIGPFLFTLIFAYFIGGNAPLALPGAPFLLAGLL LMVSALIAASTNEATKQAGTG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 1e-38 | 42 |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 2e-38 | 42 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 1e-38 | 42 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 1e-38 | 42 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 7e-39 | 41 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 1e-38 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RPD_3004 | YP_570131.1 | major facilitator transporter | AF090987.gene.p01 | Protein | 8e-33 | 43 |
| RPD_3004 | YP_570131.1 | major facilitator transporter | Y19114.gene.p01 | Protein | 3e-39 | 42 |
| RPD_3004 | YP_570131.1 | major facilitator transporter | NC_011586.7045189.p0 | Protein | 8e-36 | 42 |
| RPD_3004 | YP_570131.1 | major facilitator transporter | X75761.gene.p01 | Protein | 3e-38 | 42 |
| RPD_3004 | YP_570131.1 | major facilitator transporter | CP001485.1.gene2821. | Protein | 4e-39 | 41 |
| RPD_3004 | YP_570131.1 | major facilitator transporter | AF534183.gene.p01 | Protein | 5e-39 | 41 |
| RPD_3004 | YP_570131.1 | major facilitator transporter | NC_010410.6002597.p0 | Protein | 4e-39 | 41 |
