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Name : RPD_2787 (RPD_2787) Accession : YP_569916.1 Strain : Rhodopseudomonas palustris BisB5 Genome accession: NC_007958 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 3104320 - 3105624 bp Length : 1305 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCACGACATCAAAGCGATCCGCGACAATCCGACTGCGTTCGACGCCGCTTACACGAGGCGAGGGCTCTCGCCGATCGC GGACAGTCTGATCAAGCTCGACGAGACCCGCCGCATCGCGATTCTCGCCTCGGAGCAGGCGCAGGCGCGGCGCAATGCGG CGTCGAAGGAGATCGGCGAGGCCAAGAAGGCCAAGGACAATGCGCGCGCCGAGGTGCTGATGGCCGAGGTCGCCGAGCTC AAGACCACGATGCCGGCGCTCGAGGCCGCGGTGAAGGACGCCGACGAGGCGCTGAAGACAGCGCTGTCGGAAATCCCCAA TTTGCCGCTTGCCGACGTGCCCGAGGGCGCCGACGAGCACGGCAATGTCGAGCGGCATCATTTCGGCGCCAAGCGCAGCT ACACGTTCACGCCGAAGGCGCATGACGATCTCGGCGAAGCACTGGGCATGATGGACTTCGAAGCCGCCGCGAAACTCTCG GGCGCGCGCTTCGTCGTGCTGAAGAACGGCCTCGCCCGGCTCGAGCGCGCGATCGGTCAGTTCTTTCTCGACGTCCACAC CGGCGAGCACGGCTACACGGAAGTGAATCCGCCGTTGCTGGTGAAGGACGACGCGATGTTCGGCACGGCGCAGCTTCCGA AATTTCGTGACGATCAGTTCGCTGCCGGCGCCATCGGCAGTGGAGGTGAGGGATATTGGCTCATCCCCACCGCCGAAGTC TCGCTCACCAATCTCGTCCGCGAATCCATCCTCGACGAAAAAGAGCTGCCAATGCGCTTGACCGCGTTGACGCCTTGCTT CCGCGCCGAGGCCGGCGCTGCGGGACGTGATACGCGCGGGATGATCCGACAGCATCAGTTCACCAAGGTCGAGCTGGTGT CGATCACCACGCCGGAGAAGTCCAAGGACGAGCACGAACGGATGCTGAGCTGCGCCGAGGAGGTGCTGCGCCGGCTCGGG CTGCACTACCGGGTGATGACGCTGTGCACCGGCGACATGGGCTTCGCCTCGCAGAAGACCTACGACATCGAAGTCTGGAT GCCGGGACAAGGTGAGGGCGGCGCGTATCGCGAGATTTCATCGTGCTCGGTGTGCGGTGACTTCCAGGCGCGCCGGATGG ATGCGCGGTCGCGCGGCCCGGACGGCAAGCCGCGCTTCGTCCACACGCTGAACGGCTCCGGCACCGCCGTCGGCCGCGCG CTGATTGCGGTGATCGAGAACTATCAGCAAGAGGACGGCTCGATCGCCGTGCCCGACGTGCTGCTGCCCTATATGGGCGG GCTGAAAGTGATCGCGGCCGCGTGA Protein sequence : MHDIKAIRDNPTAFDAAYTRRGLSPIADSLIKLDETRRIAILASEQAQARRNAASKEIGEAKKAKDNARAEVLMAEVAEL KTTMPALEAAVKDADEALKTALSEIPNLPLADVPEGADEHGNVERHHFGAKRSYTFTPKAHDDLGEALGMMDFEAAAKLS GARFVVLKNGLARLERAIGQFFLDVHTGEHGYTEVNPPLLVKDDAMFGTAQLPKFRDDQFAAGAIGSGGEGYWLIPTAEV SLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSITTPEKSKDEHERMLSCAEEVLRRLG LHYRVMTLCTGDMGFASQKTYDIEVWMPGQGEGGAYREISSCSVCGDFQARRMDARSRGPDGKPRFVHTLNGSGTAVGRA LIAVIENYQQEDGSIAVPDVLLPYMGGLKVIAAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-94 | 50 |
