Name : smpB (RPD_2642) Accession : YP_569772.1 Strain : Rhodopseudomonas palustris BisB5 Genome accession: NC_007958 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 2960001 - 2960474 bp Length : 474 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCCGACAAGAACGAACGCGCGATCAAAGTGGTCGCGGAGAACCGCAAGGCGCGGTTCAACTACGCAATCGAAGACAC GATCGAGGCGGGCATCTCGCTGACCGGCACCGAGGTCAAGTCGGTCCGCAGCGGCAAGTCGACGATCGCCGAATCCTATG CGGATTCCCGCGGCGGGGAGATCTGGCTGATCAATGCCAATATCCCGGAATATCTGCAGGCCAACCGCTTCAACCACGAG CCAAAGCGGCCGCGCAAGCTGCTGCTGCACCGAAAGCAGATCAACAAGCTGATGGGCGCGGTCGAGCGTCAGGGTATGAC TCTCATTCCGCTGAAGCTGTACTTCAACGAGAAGGGCCGCGCCAAGTTGCTGCTGGCGCTGGCCAAGGGCAAGCAGCTGC ACGACAAGCGGGAAACCGAAAAGAAGCGCGACTGGAGTCGCGAGAAAGGCCGGCTGTTGCGCGCGCGCGGCTGA Protein sequence : MADKNERAIKVVAENRKARFNYAIEDTIEAGISLTGTEVKSVRSGKSTIAESYADSRGGEIWLINANIPEYLQANRFNHE PKRPRKLLLHRKQINKLMGAVERQGMTLIPLKLYFNEKGRAKLLLALAKGKQLHDKRETEKKRDWSREKGRLLRARG |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 1e-19 | 45 |