Gene Information

Name : fliQ (RPD_1696)
Accession : YP_568833.1
Strain : Rhodopseudomonas palustris BisB5
Genome accession: NC_007958
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliQ
Function : -
COG functional category : N : Cell motility
COG ID : COG1987
EC number : -
Position : 1911295 - 1911558 bp
Length : 264 bp
Strand : +
Note : FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum

DNA sequence :
ATGACTGGTCCCGAAACTCTCGACGTGGCGCGCGATGCGGTTTGGACGATCGTGATCGTCTCTACGCCGCTGATGGTGGT
CGGCCTCGTCGTCGGCGTGGCGGTGTCGCTGGTGCAGGCGCTGACCCAGATCCAGGAACAAACCCTGGTGTTCGTGCCGA
AGATTCTGGCGATGTTCCTTACCTTCGTGCTGACGCTGCCGTTCATGGCCGACGTGCTCCACGCCGAGATGTTGCGGATT
TCATCGCGAATCATCGGCGGTTGA

Protein sequence :
MTGPETLDVARDAVWTIVIVSTPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILAMFLTFVLTLPFMADVLHAEMLRI
SSRIIGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 9.2 45
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 9.2 45
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 9.2 45
escS CAI43888.1 EscS protein Virulence LEE Protein 0.15 43
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 0.047 41
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 0.055 41
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 0.032 41
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 0.055 41
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 0.047 41
unnamed AAL06355.1 EscS Virulence LEE Protein 0.13 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliQ YP_568833.1 flagellar biosynthesis protein FliQ VFG0395 Protein 0.008 43
fliQ YP_568833.1 flagellar biosynthesis protein FliQ VFG1260 Protein 0.025 42
fliQ YP_568833.1 flagellar biosynthesis protein FliQ VFG0520 Protein 0.013 41