Gene Information

Name : fliP (RPD_1691)
Accession : YP_568828.1
Strain : Rhodopseudomonas palustris BisB5
Genome accession: NC_007958
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1907818 - 1908585 bp
Length : 768 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
GTGAGCCGCCCGGCCACACCGCGTAGAGTATTCATTTTCCTCACCGTCCTGATCGCCGCCGCAGCCGCGCTGGCGACGCC
GGCGCTTGCGCAGGACGTCAGCATCAATCTCGGCGGCGCCGGTGGCACCGGGGTGACCGAGCGTGCGATCCAGCTGATCG
CGCTGCTGACCGTGCTGTCGATCGCGCCGTCGATCCTGGTGATGATGACGTCGTTCACCCGGATCGTGGTGGTGTTGTCG
CTGCTGCGCACCGCGCTCGGCACGGCGACCGCGCCGCCGAACTCCGTGATCATCGCGCTGGCGCTGTTCCTCACCGGCTT
CGTGATGGGACCGACGCTGCAAAAATCCTACGATGACGGCATCAAGCCGCTGATCGCCAACGAGATGGCTGTCGAGGATG
CGCTGGTGCGCGCCTCCGGACCGCTGCGCATCTTCATGCAGAAGAACGTTCGCGAGAAGGATCTCAAGCTGTTCCTCGAT
CTGTCCGGCGAGCAGCCGCCGGCCACGCCGGAAGAGTTGTCGCTGCGCATCCTGATGCCGGCCTTCATGATCTCGGAGCT
GAAGCGCGCCTTCGAGATCGGCTTCCTGCTGTTCCTGCCGTTCCTGATCATCGACCTCGTCGTCGCATCGGTGCTGATGT
CGATGGGCATGATGATGCTGCCGCCGGTCGTGGTGTCGCTGCCGTTCAAGCTGATCTTCTTCGTGCTGGTCGACGGCTGG
TCGCTGGTCGCGGGCTCGCTGGTGCAGAGCTATTCGGGCAGCGGGTAG

Protein sequence :
MSRPATPRRVFIFLTVLIAAAAALATPALAQDVSINLGGAGGTGVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLS
LLRTALGTATAPPNSVIIALALFLTGFVMGPTLQKSYDDGIKPLIANEMAVEDALVRASGPLRIFMQKNVREKDLKLFLD
LSGEQPPATPEELSLRILMPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGW
SLVAGSLVQSYSGSG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-26 48
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-25 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-25 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 7e-26 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 7e-26 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 6e-26 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 6e-25 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-21 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_568828.1 flagellar biosynthesis protein FliP VFG2338 Protein 5e-46 56
fliP YP_568828.1 flagellar biosynthesis protein FliP VFG2494 Protein 9e-50 55
fliP YP_568828.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-43 50
fliP YP_568828.1 flagellar biosynthesis protein FliP VFG2016 Protein 1e-40 49
fliP YP_568828.1 flagellar biosynthesis protein FliP VFG0394 Protein 3e-27 44
fliP YP_568828.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-27 44
fliP YP_568828.1 flagellar biosynthesis protein FliP VFG0188 Protein 3e-28 44
fliP YP_568828.1 flagellar biosynthesis protein FliP VFG0519 Protein 3e-26 43