Gene Information

Name : fliP (Sden_0063)
Accession : YP_561083.1
Strain : Shewanella denitrificans OS217
Genome accession: NC_007954
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 71500 - 72189 bp
Length : 690 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGGTAGCAACTCAAACATTAAATGAATGGCTGCCACACTTATTGGATAAACCTTGGTTAGATAGCTTGGCACCAGAACT
AAGAATTGTTCTTGCTGTTAGTAGCTTGACATTGATTCCTGTTTTTGTCATCGCAATGACCGCCTTTACACGGATTATTA
TAGTGCTGTCATTAGTCAGGCAAGCATTAGGTTTACAGCAAACTCCGCCAAACAGTGTCTTAATTGCTCTTAGTTTATTT
TTAACTATTTTTGCTATGAGTGGCGTATTTGAACAGATTAATAATAAAGCACTGCTTCCTTATGCTAACGGCTCCATTGA
GTTAAGTGCTGCTGTGAGTAACGGCATTGAACCACTGAAGGGGTTTATGTTGTCGCAAACGGATGAGGTTCATTTCATTA
GAGTATTGGATATGGCAAAAGTGCCAGTGCCACAATCTTCAGCGGATGTATCCTTGACGCACTTAGTCCCTGCGTTCATG
TTATCGGAGCTAACATTAGCTTTTAAGATGGCATTCCTCATTTTTCTTCCTTTTTTGATGATAGATTTACTCGTCGCTAG
CTGCTTGATGGCTCTGGGTATGATTATGGTCCCGCCGATTACAGTATCATTACCATTGAAAATTATGGTTTTTGTGCTTA
TTGATGGCTGGTCATTAATCACTGGATCTTTAGTGCAAAGTTTTATGTGA

Protein sequence : 
MVATQTLNEWLPHLLDKPWLDSLAPELRIVLAVSSLTLIPVFVIAMTAFTRIIIVLSLVRQALGLQQTPPNSVLIALSLF
LTIFAMSGVFEQINNKALLPYANGSIELSAAVSNGIEPLKGFMLSQTDEVHFIRVLDMAKVPVPQSSADVSLTHLVPAFM
LSELTLAFKMAFLIFLPFLMIDLLVASCLMALGMIMVPPITVSLPLKIMVFVLIDGWSLITGSLVQSFM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-28 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-29 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_561083.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-49 52
fliP YP_561083.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-45 50
fliP YP_561083.1 flagellar biosynthesis protein FliP VFG2338 Protein 5e-45 49
fliP YP_561083.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-45 49