Gene Information

Name : Sden_0425 (Sden_0425)
Accession : YP_561441.1
Strain : Shewanella denitrificans OS217
Genome accession: NC_007954
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 496691 - 497500 bp
Length : 810 bp
Strand : +
Note : -

DNA sequence :
ATGAGTGTCAGTAAGTCAGGCTATTACGATTGGCATAAACGCCCTACAAATGTGATAAGCCTTGAAACATTGAAGCTTTA
TCGCCTTGTTCGACAGCTATTTAAGCAAAGTCGAGGCAGCTTAGGGAATCGTGAAATGGTGAAGAAATTGCGCAAGGAAG
GCTACCAGGTTGGTCGCTATCTCGTTCGTAAAATTATGCACCGCCTTCGACTCAAAGCTACCCAGCGACGAGCTTACAAG
GTGACGACACAGCGAAAACACTCTGATGCAGTGGCTGATAATCTGTTAAACATGAACTTTAACCCAGTATCCGCAAATCA
GGTTTGGGCAGGTGACGTGACCTATTTAAAGACAGGTGAAGGCTGGATGTACTTGGCAGTGGTAATGGATTTATATTCAC
GCCGGATTGTTGGATGGCACATAGACAAGCGTATGACCACGGATTTGATATCTAAGGCATTAATGAAAGCCTACAACCTG
CGTCAACCGGCCAGAGGGCTGGTATTTCACAGTGACCGAGGCTCACAGTATACCAGCAAGCAATTCGGTAAGCTGCTATC
GAGCTATGGTATCCGAGCCAGTATGGGGGATGTGGGTGCGTGTTGGGATAATGCCGTCGTTGAACGTTTCTTTGGTAGTT
TGAAACACGATTGGATTTTTAAAGTTGCTCAACCAACAAGGGAGTTTATGAAGCAAGATGTGACTGCTTACATGAAATAT
TACAACTTGGAGCGACTTCATTCTGCTAATGGTGATCTGTCACCTGTAGAATTTGAAAATTCTCAACTAAAAGTGTCCAA
TTTGGGTTGA

Protein sequence :
MSVSKSGYYDWHKRPTNVISLETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRRAYK
VTTQRKHSDAVADNLLNMNFNPVSANQVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVGWHIDKRMTTDLISKALMKAYNL
RQPARGLVFHSDRGSQYTSKQFGKLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAYMKY
YNLERLHSANGDLSPVEFENSQLKVSNLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-38 42
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 1e-38 42
unnamed AAC31485.1 L0006 Not tested LEE Protein 5e-38 41
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 7e-38 41
unnamed CAI43898.1 putative transposase Not tested LEE Protein 1e-37 41
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 1e-37 41
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 9e-36 41
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 9e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sden_0425 YP_561441.1 integrase catalytic subunit VFG1484 Protein 5e-36 41