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Name : fliP (Sden_3664) Accession : YP_564662.1 Strain : Shewanella denitrificans OS217 Genome accession: NC_007954 Putative virulence/resistance : Virulence Product : flagellar biosynthesis protein FliP Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : - Position : 4380531 - 4381262 bp Length : 732 bp Strand : + Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus DNA sequence : ATGATGTTAAGAGCCTTTATTCTTGGTTGGTTATTGCTATCGCCACAAGCCTTAGGCGCTGATGGCTTCACGCTACTCAC GCTAGATTCTGGCCAAGAAAGCCAAGCTGTGAATATTAAGCTAGAAATCTTAGCCTTGATGACAGCATTGAGTTTTCTCC CAGCTATGCTGATGATGCTAACCAGCTTCACTCGTATCGTGGTGGTGCTAGCTATTTTGCGTCAAGCACTGGGGTTACAG CAGAGCCCACCTAATAAGGTGCTAATCGGAATCGCCTTAGTGCTGACACTGTTTATCATGCGCCCCGTGGGCGATAGCAT CTATAAAGAAGCCTATCTTCCCTACGATCAAGGCAAGATAGAGCTTATGGCCGCCATAGATATTGCCAAGGTGCCTTTAA GTCAGTTTATGCTAGCCCAGACTCGGGAAACTGATTTAGAGCAGATGCTAAAGATTGCCAATGAGCCCATCGACTTAACA CCGGCCGAAATCCCATTTCTAGTACTCATGCCGGCCTTTGTACTCAGTGAACTTAAAACTGCGTTTCAGATAGGTTTTCT ACTGTTTTTACCTTTCTTAGTCATAGATTTGGTGGTCGCTAGTGTCTTGATGTCCATGGGCATGATGATGCTGTCTCCCT TGATTATTTCTTTGCCATTCAAGTTAATGATTTTCGTCTTGGTGGATGGTTGGGCCATGACGGTAAGCACGCTTACAGCC AGTTTTGGATAA Protein sequence : MMLRAFILGWLLLSPQALGADGFTLLTLDSGQESQAVNIKLEILALMTALSFLPAMLMMLTSFTRIVVVLAILRQALGLQ QSPPNKVLIGIALVLTLFIMRPVGDSIYKEAYLPYDQGKIELMAAIDIAKVPLSQFMLAQTRETDLEQMLKIANEPIDLT PAEIPFLVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMIFVLVDGWAMTVSTLTA SFG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 3e-27 | 44 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 5e-22 | 44 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 4e-27 | 44 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 4e-27 | 44 |
| XC_3016 | YP_244084.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-27 | 44 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 3e-27 | 44 |
| hrcR | NP_636600.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-27 | 44 |
| hrcR | BAB07862.1 | HrcR | Virulence | Hrp PAI | Protein | 3e-26 | 43 |
| hrcR | AAT96303.1 | HrcR | Virulence | S-PAI | Protein | 6e-18 | 43 |
| hrcR | AAT96343.1 | HrcR | Virulence | S-PAI | Protein | 6e-18 | 43 |
| hrcR | AAT96262.1 | HrcR | Virulence | S-PAI | Protein | 6e-18 | 43 |
| hrcR | YP_198720.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-26 | 43 |
| ssaR | NP_460384.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 1e-20 | 42 |
| ssaR | CAA68199.1 | secretion system apparatus, SsaR | Virulence | SPI-2 | Protein | 8e-21 | 42 |
| yscR | NP_456109.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 2e-20 | 42 |
| yscR | NP_805090.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 2e-20 | 42 |
| ssaR | YP_216427.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 1e-20 | 42 |
| escR | AFO66317.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-19 | 42 |
| escR | AFO66400.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-19 | 42 |
| hrcR | ABA47279.1 | HrcR | Virulence | S-PAI | Protein | 7e-19 | 41 |
| escR | ACU09473.1 | type III secretion system protein EscR | Virulence | LEE | Protein | 3e-19 | 41 |
| ECs4583 | NP_312610.1 | type III secretion system protein | Virulence | LEE | Protein | 1e-18 | 41 |
| escR | YP_003223490.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 4e-19 | 41 |
| escR | YP_003232138.1 | type III secretion system protein | Virulence | LEE | Protein | 4e-19 | 41 |
| escR | AAK26700.1 | EscR | Virulence | LEE | Protein | 3e-19 | 41 |
| escR | YP_003236103.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 3e-19 | 41 |
| escR | AAL57527.1 | EscR | Virulence | LEE | Protein | 3e-19 | 41 |
| escR | NP_290283.1 | type III secretion system protein | Virulence | LEE | Protein | 3e-19 | 41 |
| escR | CAC81847.1 | EscR protein | Virulence | LEE II | Protein | 3e-19 | 41 |
| escR | CAI43889.1 | EscR protein | Virulence | LEE | Protein | 3e-19 | 41 |
| escR | AAC31528.1 | L0049 | Virulence | LEE | Protein | 3e-19 | 41 |
| escR | AAC38369.1 | EscR | Virulence | LEE | Protein | 2e-19 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliP | YP_564662.1 | flagellar biosynthesis protein FliP | VFG1259 | Protein | 4e-45 | 59 |
| fliP | YP_564662.1 | flagellar biosynthesis protein FliP | VFG2338 | Protein | 3e-43 | 56 |
| fliP | YP_564662.1 | flagellar biosynthesis protein FliP | VFG2016 | Protein | 1e-42 | 56 |
| fliP | YP_564662.1 | flagellar biosynthesis protein FliP | VFG2494 | Protein | 1e-44 | 53 |
| fliP | YP_564662.1 | flagellar biosynthesis protein FliP | VFG0044 | Protein | 2e-21 | 43 |
| fliP | YP_564662.1 | flagellar biosynthesis protein FliP | VFG0519 | Protein | 5e-21 | 42 |
| fliP | YP_564662.1 | flagellar biosynthesis protein FliP | VFG0188 | Protein | 4e-21 | 41 |
| fliP | YP_564662.1 | flagellar biosynthesis protein FliP | VFG0827 | Protein | 1e-19 | 41 |
| fliP | YP_564662.1 | flagellar biosynthesis protein FliP | VFG0715 | Protein | 1e-19 | 41 |
