Gene Information

Name : Sden_3661 (Sden_3661)
Accession : YP_564659.1
Strain : Shewanella denitrificans OS217
Genome accession: NC_007954
Putative virulence/resistance : Virulence
Product : sigma-54 factor, interaction region
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 4377148 - 4378452 bp
Length : 1305 bp
Strand : -
Note : -

DNA sequence : 
ATGGATAACCTTAAAATACGTTTGGTTGATTTTACGCTTTCAGTAGCAACCTTAGAACGACTAAAATCCCAAGGATTTAC
ACTGTGGCAACAAGGAAATACGGTACCTTGGTTGACCATAATAAACCTTTCTCAATTTAAGCCGTCTCAATTGGCGGGGC
ATTTGAGTGGTTTCTCAAGTAAAAACTTCTTGGCATTACTCGCTCCCGAACAAGGGGAGTTGGCTGCGGCTGCCATGCAG
TCAGGCGTACAAGACTATTTACTGCTTCCTGTTGAAGATGAGCAGCTCATTGCTTCAATTTCACGTCTACATCGCTTGGA
GCAACCGGACCCTAAACTCATTGTTGCCGCTCCCGTTAGCCGACAGTTGCTTATGTTAGCTCATAGAGCAGCCACCACTG
AGGCCACTGTACTACTCACGGGTGAAAGTGGTACAGGTAAAGAGCCGCTGGCCAATTATATTCATCGTCATTCAAGTCGC
GCCCACAAGCCTTTTATCGCCATCAATTGCGCTGCTATTCCCGAAACCATGCTCGAATCTATTCTCTTTGGTCACACTAA
GGGGGCGTTTACGGGGGCGAGTAGCGATAAAGCCGGTAAATTTGAGCAAGCCAACGGCGGCTCGCTGTTGCTGGATGAAA
TTGCTGAAATGCCGCTGGCTCTGCAAGCTAAATTACTGCGGGTGCTACAAGAGAGAGAAGTTGAACGTTTAGGTGGCAGT
CAGGCTATTCCCCTCGATATTAGAGTGATAGCGGCAACCAATAAAGATTTACGTCAAGCGGTTGAAAACGGCACTTTTAG
AGAGGACCTTTTCTATCGTTTGGATGTGCTGCCACTAAAAATCTTTCCCCTTAGGGACAGAAAAACCGACATTTTGCCCT
TAGCCGAGCATTTTTTACATCGCTTTGATACCCAAGGTGTGGAGTGTTACTTCAGCCGTCAGGCGCGCGAAGCTTTACTG
GCTTACGATTGGCCGGGGAATGTCCGTGAGCTGGAAAATTGCATTCAACGAGCCTTGGTTATGCGCCGTGGCCAAGCTAT
CCAAGCGGCCGAACTCGGTTTGTCAGTGGGCTGTGAAATTCAATTACCAGAATCTCATAGCCCTATTTCTGGGCTGAAAG
AATCTAAACGCCAAGCCGAATTTCAATTCATTGTCGATATTTTAAGGCGTGTGCAAGGAAACCGCAGTCAGACTGCTGCG
GAACTTGGCATGACCACAAGAGCGCTAAGATACAAGTTGGCTCAAATGCGAGATGCGGGGATTGATGTCGATCAGCTACT
GCAGCGTGCGGGTAATGCAGCTTGA

Protein sequence : 
MDNLKIRLVDFTLSVATLERLKSQGFTLWQQGNTVPWLTIINLSQFKPSQLAGHLSGFSSKNFLALLAPEQGELAAAAMQ
SGVQDYLLLPVEDEQLIASISRLHRLEQPDPKLIVAAPVSRQLLMLAHRAATTEATVLLTGESGTGKEPLANYIHRHSSR
AHKPFIAINCAAIPETMLESILFGHTKGAFTGASSDKAGKFEQANGGSLLLDEIAEMPLALQAKLLRVLQEREVERLGGS
QAIPLDIRVIAATNKDLRQAVENGTFREDLFYRLDVLPLKIFPLRDRKTDILPLAEHFLHRFDTQGVECYFSRQAREALL
AYDWPGNVRELENCIQRALVMRRGQAIQAAELGLSVGCEIQLPESHSPISGLKESKRQAEFQFIVDILRRVQGNRSQTAA
ELGMTTRALRYKLAQMRDAGIDVDQLLQRAGNAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR AAC35799.1 transcriptional regulator Virulence Hrp PAI Protein 2e-45 41
hrpR AAT96162.1 HrpR Virulence T-PAI Protein 2e-46 41
hrpR AAT96216.1 HrpR Virulence T-PAI Protein 2e-46 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sden_3661 YP_564659.1 sigma-54 factor, interaction region BAC0467 Protein 4e-64 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sden_3661 YP_564659.1 sigma-54 factor, interaction region VFG1249 Protein 2e-82 51