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Name : Sden_3656 (Sden_3656) Accession : YP_564654.1 Strain : Shewanella denitrificans OS217 Genome accession: NC_007954 Putative virulence/resistance : Virulence Product : ATPase FliI/YscN Function : - COG functional category : N : Cell motility COG ID : COG1157 EC number : 3.6.3.15 Position : 4372011 - 4373348 bp Length : 1338 bp Strand : - Note : - DNA sequence : TTGAGGGCTAAGCTATTACAGCCAGATTGGCCCACCGTACCCGTCGCTCGGGTCTATGGCAGATTGACTCGGGTCAATGG CTTAGTGCTTGAGGCGGTAGGTTGCCAGTTAGGCATGGGTGACCGTTGCCAGATTGAAGGCCGAGAAGGACGACTCATTG AGGCCGAAGTGGTGGGCTTTAATAAAGACGTGCTGTGCTTAATGCCCATAGAATCAACCCATGGGGTGATGCCAGGCGCC AGAGTTATTCCTATTACCGAGCCCCAGAAGCTGATGATAGGTGATGGTTTGTTAGGCCGAGTACTGGACGGCCTAGGCCA ACCTTTGGATTTACTCGGTAAGCTGACAGGGGTTCAGCAACAGACACCCAGTAACAGCAGTTATAACCCTTTATTAAGAC AACCCATTAGCCAAGCTTTGGATGTAGGCATTCGTGCCATTAATAGCTTATTACCTATAGGCAGAGGCCAAAGACTTGGC TTGTTTGCAGGCTCTGGGGTGGGTAAGAGTATGTTGCTTGGGATGATGACCCGTTTTACCGAAGCCGATGTGGTGGTGGT GGGTTTGATTGGTGAACGTGGCCGTGAAGTACGCGAATTTATCGAGCAAACCTTAGGGGAAGAAGGCCGCAAACGGGCAG TAGTGATAGCCGCACCGGCAGATACCACTCCCTTGATGCGCCTGCGGGCAATGGTATTGAGTCACGAGATAGCCTGTGGT TTTCGCGATCAAGGTAAACAAGTATTGCTGCTGGTGGACTCATTAACCCGTTATGCCCAGGCGCAGCGAGAAATTGCCCT CAGTTTAGGTGAGCCGCCTGCAACCAAAGGTTATCCACCTTCAGCATTTGCTAAATTACCACATTTGGTTGAAATGGCGG GTAACGGCCAGCATCCACAAGGGACGCTAACCGCATTTTATACCGTGTTAACCGAAGGCGATGACCAGCAAGATCCGGTT GCCGATGCCGCCAGAGCCATCTTAGATGGTCATGTGGTGCTCAGTCGTAAGCTTGCTGAACAAGGCCACTTTCCTGCCAT AGATATTAATGCCTCTGTCAGTCGTCTAGCGACCCAGATAGCGAGCCAAGACAACTTAAGCCAGAGTCATGTGGTGCGTC ATTTATTAAGTCGTTATAACGAAGTGCGTGAGCTACTGCCCTTAGGTGGCTATCAAGCGGGTCATGATCAAGAGATGGAT CTTGCAGTGCGTCATTACCGTGATATTGCCGCATTCTTGCGCCAGCACATGAATGAAAACATTAGTCGTGAGGCCAGCTT GACTCAGTTAGCGCAATTGATGGAGGTGATGGGATATGAGCCACAAGCGGTTAACTAA Protein sequence : MRAKLLQPDWPTVPVARVYGRLTRVNGLVLEAVGCQLGMGDRCQIEGREGRLIEAEVVGFNKDVLCLMPIESTHGVMPGA RVIPITEPQKLMIGDGLLGRVLDGLGQPLDLLGKLTGVQQQTPSNSSYNPLLRQPISQALDVGIRAINSLLPIGRGQRLG LFAGSGVGKSMLLGMMTRFTEADVVVVGLIGERGREVREFIEQTLGEEGRKRAVVIAAPADTTPLMRLRAMVLSHEIACG FRDQGKQVLLLVDSLTRYAQAQREIALSLGEPPATKGYPPSAFAKLPHLVEMAGNGQHPQGTLTAFYTVLTEGDDQQDPV ADAARAILDGHVVLSRKLAEQGHFPAIDINASVSRLATQIASQDNLSQSHVVRHLLSRYNEVRELLPLGGYQAGHDQEMD LAVRHYRDIAAFLRQHMNENISREASLTQLAQLMEVMGYEPQAVN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0267 | YP_002345348.1 | type III secretion system ATPase | Virulence | Not named | Protein | 1e-76 | 47 |
| lscN | AAO18044.1 | LscN | Virulence | TTSS locus | Protein | 3e-72 | 45 |
| hrcN | AAP34339.1 | HrcN | Virulence | Hrp PAI | Protein | 9e-75 | 44 |
| hrcN | NP_640767.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 7e-74 | 44 |
| hrpB6 | BAB07852.1 | HrpB6 | Virulence | Hrp PAI | Protein | 6e-75 | 44 |
| hrcN | YP_198730.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 8e-75 | 44 |
| hrpB6 | AAF61281.1 | HrpB6 | Virulence | Hrp PAI | Protein | 6e-75 | 44 |
| XC_3006 | YP_244074.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 5e-73 | 44 |
| hrcN | NP_636610.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 5e-73 | 44 |
| hrpB6 | AAB08461.1 | HrpB6 | Virulence | Hrp PAI | Protein | 8e-74 | 44 |
| hrcN | YP_362163.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 1e-73 | 44 |
| hrcN | AAT96141.1 | HrcN | Virulence | T-PAI | Protein | 3e-69 | 44 |
| hrcN | AAT96195.1 | HrcN | Virulence | T-PAI | Protein | 3e-69 | 44 |
| hrcN | AAR25633.1 | type III secretion cytoplasmic ATPase HrcN | Not tested | Not named | Protein | 1e-64 | 44 |
| hrcN | AAG33879.1 | HrcN | Virulence | Hrp PAI | Protein | 4e-64 | 44 |
| hrcN | NP_791227.1 | type III secretion cytoplasmic ATPase HrcN | Virulence | Hrp PAI | Protein | 2e-66 | 43 |
| invC | YP_217813.1 | ATP synthase SpaL | Virulence | SPI-1 | Protein | 2e-58 | 43 |
| spaI | NP_457288.1 | secretory apparatus ATP synthase (associated with virulence) | Virulence | SPI-1 | Protein | 2e-58 | 43 |
| spaI | NP_806497.1 | ATP synthase SpaL | Virulence | SPI-1 | Protein | 2e-58 | 43 |
| invC | NP_461815.1 | ATP synthase SpaL | Virulence | SPI-1 | Protein | 2e-58 | 43 |
| hrcN | ABQ88354.1 | HrcN | Virulence | Hrp PAI | Protein | 2e-65 | 42 |
| hrpJ4 | AAA81942.1 | HrpJ4 | Virulence | Hrp PAI | Protein | 2e-65 | 42 |
| hrcN | AAB06001.1 | HrcN | Virulence | Hrp PAI | Protein | 3e-67 | 42 |
| hrcN | ABA47275.1 | HrcN | Virulence | S-PAI | Protein | 3e-70 | 41 |
| hrcN | AAT96299.1 | HrcN | Virulence | S-PAI | Protein | 3e-67 | 41 |
| hrcN | AAT96339.1 | HrcN | Virulence | S-PAI | Protein | 1e-67 | 41 |
| hrcN | AAT96258.1 | HrcN | Virulence | S-PAI | Protein | 7e-67 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sden_3656 | YP_564654.1 | ATPase FliI/YscN | VFG1254 | Protein | 3e-107 | 58 |
| Sden_3656 | YP_564654.1 | ATPase FliI/YscN | VFG2331 | Protein | 1e-98 | 57 |
| Sden_3656 | YP_564654.1 | ATPase FliI/YscN | VFG2499 | Protein | 6e-103 | 57 |
| Sden_3656 | YP_564654.1 | ATPase FliI/YscN | VFG0192 | Protein | 5e-71 | 47 |
| Sden_3656 | YP_564654.1 | ATPase FliI/YscN | VFG0390 | Protein | 3e-71 | 46 |
| Sden_3656 | YP_564654.1 | ATPase FliI/YscN | VFG0555 | Protein | 7e-59 | 43 |
| Sden_3656 | YP_564654.1 | ATPase FliI/YscN | VFG2144 | Protein | 7e-73 | 41 |
