Gene Information

Name : Sden_3489 (Sden_3489)
Accession : YP_564487.1
Strain : Shewanella denitrificans OS217
Genome accession: NC_007954
Putative virulence/resistance : Unknown
Product : transposase, IS4
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4177902 - 4178834 bp
Length : 933 bp
Strand : +
Note : -

DNA sequence :
ATGCCCATTATTCTCGTCGATTGGTCTGATGTTCGCAAACAGCTTCGAATAATGACGCTACGCGCATCCATCAGCGTTCA
AGGTCGCTCTGTGACTCTGTATGAACGGACTTTTCTATTCACTGACTACAATGCACCACGCAGTCACAATGCTTTTCTCG
CTGAACTAGAAAAAATTTTACCTCGGGGCTGCTGCCCACTCATAGTGACCGATGCAGGTTACCGAAACACCTGGTTTAGG
GAAGTTGAACGTTATGGCTGGTTTTGGCTCGGCAGAGTGCGCGGGGATGTAAGCTTTATGCTGCATGGGCAAACCACTTG
GCATTCAAACAAATCGCTCTACCCAAAAGCAAACTCAACCGCTAAATACATAGGTAATGTCCAGCTTGCACGTAAATCAC
CGCTAAGCTGCCATTTACATCTATTTAAGGCTAAGCCCAAATTACGTAAAGATAAACTCTCCTCGAAAGCGGGCCGAAAC
CACACCGCACAAAAGAGTTATCGCTTAGGCAGTAAGGAGCCATGGCGGCTGGCGACCAATTTACCACCTGAATACTTCAA
TCCAGCAAAAGTGGTTGAGCTATATGCTAAACGCATGCAAATTGAAGAAACCTTTCGGGATTTAAAAAGCCCACAATATG
GCATGGGACTAAGGCAAAGTCGCAGTCGGTGTCCAAAGCGATATGATGTGTTGTTGCTTATCGCTATCCTGGCAGAAATA
CTGTTGTGGTGTATAGGAATAGCCGCGAGGCATCTTGGCTGGCAGAAGGATTTCCAAGCTAACAGCATCAAATATCGCGC
TGTATTATCCGTTGTAAGATTAGGAAAAGAAGTGCGGCGAAGGCCAAAATACACACTAAAAGCATCGATAATTTACTGGG
CATTAAACGAATATATCAAACTGGTTCATACCGCTGGCAGACCAAATTTATGA

Protein sequence :
MPIILVDWSDVRKQLRIMTLRASISVQGRSVTLYERTFLFTDYNAPRSHNAFLAELEKILPRGCCPLIVTDAGYRNTWFR
EVERYGWFWLGRVRGDVSFMLHGQTTWHSNKSLYPKANSTAKYIGNVQLARKSPLSCHLHLFKAKPKLRKDKLSSKAGRN
HTAQKSYRLGSKEPWRLATNLPPEYFNPAKVVELYAKRMQIEETFRDLKSPQYGMGLRQSRSRCPKRYDVLLLIAILAEI
LLWCIGIAARHLGWQKDFQANSIKYRAVLSVVRLGKEVRRRPKYTLKASIIYWALNEYIKLVHTAGRPNL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
IS1999 CAJ77042.1 Insertion sequence Not tested AbaR1 Protein 4e-72 53
tnp AEA34674.1 IS10 transposase Not tested Not named Protein 1e-68 48
tnp AEA34664.1 IS10 transposase Not tested Not named Protein 1e-68 48
SF2983 NP_708757.1 iso-IS10R ORF Not tested SHI-1 Protein 4e-69 48
IS10 CAI43894.1 transposase for IS10 Not tested LEE Protein 3e-69 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sden_3489 YP_564487.1 transposase, IS4 VFG0647 Protein 1e-69 48