|
Name : Sden_3476 (Sden_3476) Accession : YP_564474.1 Strain : Shewanella denitrificans OS217 Genome accession: NC_007954 Putative virulence/resistance : Resistance Product : ATP-dependent DNA helicase RecG Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1200 EC number : - Position : 4161629 - 4163704 bp Length : 2076 bp Strand : + Note : catalyzes branch migration in Holliday junction intermediates DNA sequence : TTGAAGCAACTGGATATCACCCCTGTCACAGAACTCAAAGGCGTCGCTAAAAAGATGGCCGAGAGACTGGCTAAGCTTGG CATACAAACAGTGCAGGACTTGCTGTTTCATTTGCCGCTGCGCTACGAAGACAGGACTCAAGTTTACCCTATTGCCAGTT TGCCACCGGGCAGCTACGGCACCATAGAAGCCCATATACACTCGAGTCAAATACTCCAAGGTCGCAGACGCATGCTAGTG TGTCAGGTGCGTGATAATACCGGCAGCCTCACCCTTAAGTTTTTTAATTTCACCATGGCCCAGCGCAATAGCATGCAAAA TGGCGCCCTTATCCGCGCCTATGGTGAAATTCGACGTGGCAGCCATCAAGCTGAAATCGTCCATCCCGATTATAAAATTA TCGATTCAGATGAAAGCTTTACTCCCAGTGAAACCCTGTCGCCAATTTATCCCACCACTGAGGGCTTAAAGCAGGCTAGC TGGCTAAAACTCACCGAGCAGGCGCTTGTGATGCTGGCCCAGGGCGGCTTAGTTGAACGCCTGCCAGAGCAGCTTAGGCC CAATAATTTAAGCCTGCCCCAAGCATTGCAAATTTTGCACCGCCCGCCAAATCATGTCAGTCAAGAGGCCTTAGAGCAAG GTCAACATCCGGCCCAACAAAGGCTAATTCAAGAAGAATTATTGGCCCACAACTTAAGCATGTTAAAGCTGCGTCAGCGC AGCAACCAAGATAGCGCTATGCCCATGGCGGCGTCGGGCAGATTATTAAACCCTTTCCTCGCAAGCCTGCCTTTCTCCCC CACGGGAGCCCAGCAAAGGGTGGGGATTGATATCAGCACAGATCTTGAAAAGCCCCAGCCCATGATGCGCCTTGTGCAAG GGGATGTAGGCTCAGGTAAGACTTTAGTGGCGGCGCTCGCGGCGCTGCAAGCCATAGAAAATGGTTATCAAGTGGCCATG ATGGCACCGACAGAATTACTGGCCGAGCAACACAGCGCCAACTTTAGTGCCTGGTTTGAACCTTTAGGCATTAAGGTGGG TTGGCTTGCGGGTAAGCTTAAGGGCAAGGCGCGGGCGCAATCCTTGGAAGACATCGCCTCGGGCGCGGCGCAGATGGTGG TCGGCACCCATGCATTATTTCAACAAAATGTAGCCTTCAATAAGCTGGCCTTGATTATCATCGACGAGCAGCACAGATTT GGCGTGCATCAACGATTAGAATTACGTGAAAAAGGGGTTAGCCAAGGGTTTCATCCCCATCAATTGATCATGACGGCGAC CCCTATTCCGCGCACGTTGGCCATGACGGCCTATGCCGACCTTGATACCTCAGTCATCGATGAATTGCCGCCGGGGCGTA CCCCAGTCACTACCGTGGCCATTCCCGATACACGCCGCGAGCAGGTCATTGCTAGGGTGCAGCAGGCGGCCAAGACAGAT AAACGCCAAACCTATTGGGTGTGCACCTTAATCGATGAATCCGAAGTATTAGAATGCCAAGCCGCCGAAGACACGGCCGC GGAACTCGCCATAGCTCTGCCAGAACTTAAGGTCGGCTTAGTCCACGGGCGAATGAAGAGCGCCGATAAACAGGCGGTCA TGGCGCAATTTAAGATGGGAGAATTGGATTTATTAGTGGCGACAACCGTCATTGAAGTGGGGGTCGATGTGCCCAATGCC AGCCTAATGGTGATAGAAAACCCCGAACGTTTAGGCCTAGCCCAACTGCACCAATTACGCGGCCGAGTGGGACGAGGCGC TATTGCCAGTCACTGCGTGTTACTCTATAAGGCGCCGTTATCCTACACGGCCACTAAACGCCTTGGGGTATTAAGGGACA GCAACGACGGCTTTGTTATCGCCCAGAAAGATTTAGAAATTCGCGGCCCAGGTGAAGTGCTAGGCACAAAGCAGACAGGA TTGGCAGAACTTAAGATTGCCGACTTAGTGCGGGATCAATATCTCATCCCTCATATACAGAAGCTCGCGGTACACATGAT GCAACAAGCCCCAGAGCAGGTCGATGGAATTATCACTCGCTGGCTAGGTCATAGGCAGCAATACGTACAAGCATAA Protein sequence : MKQLDITPVTELKGVAKKMAERLAKLGIQTVQDLLFHLPLRYEDRTQVYPIASLPPGSYGTIEAHIHSSQILQGRRRMLV CQVRDNTGSLTLKFFNFTMAQRNSMQNGALIRAYGEIRRGSHQAEIVHPDYKIIDSDESFTPSETLSPIYPTTEGLKQAS WLKLTEQALVMLAQGGLVERLPEQLRPNNLSLPQALQILHRPPNHVSQEALEQGQHPAQQRLIQEELLAHNLSMLKLRQR SNQDSAMPMAASGRLLNPFLASLPFSPTGAQQRVGIDISTDLEKPQPMMRLVQGDVGSGKTLVAALAALQAIENGYQVAM MAPTELLAEQHSANFSAWFEPLGIKVGWLAGKLKGKARAQSLEDIASGAAQMVVGTHALFQQNVAFNKLALIIIDEQHRF GVHQRLELREKGVSQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRREQVIARVQQAAKTD KRQTYWVCTLIDESEVLECQAAEDTAAELAIALPELKVGLVHGRMKSADKQAVMAQFKMGELDLLVATTVIEVGVDVPNA SLMVIENPERLGLAQLHQLRGRVGRGAIASHCVLLYKAPLSYTATKRLGVLRDSNDGFVIAQKDLEIRGPGEVLGTKQTG LAELKIADLVRDQYLIPHIQKLAVHMMQQAPEQVDGIITRWLGHRQQYVQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| recG | CAJ77039.1 | ATP-dependent DNA helicase | Not tested | AbaR1 | Protein | 8e-103 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sden_3476 | YP_564474.1 | ATP-dependent DNA helicase RecG | BAC0356 | Protein | 0.0 | 60 |
