Gene Information

Name : Sden_2850 (Sden_2850)
Accession : YP_563852.1
Strain : Shewanella denitrificans OS217
Genome accession: NC_007954
Putative virulence/resistance : Resistance
Product : ABC transporter related
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3400735 - 3401457 bp
Length : 723 bp
Strand : -
Note : -

DNA sequence :
ATGTTAACCATGAAGAACATTAGCAAGGTATTTAAGACGGATCTAGTGGAAACCCATGCCTTGAGAGACTTTAACCTGAC
GGTCAATGAAGGGGAGTTTGTCGCTGTGACTGGGCCATCGGGTTCAGGCAAAACCACTTTTTTAAACATTGCCGGCATGT
TAGAGGGCTTTACTCATGGGGAGTATTTTCTCGATGGTGAAAACGTTTCAAATTTAACTGACAACAAGAGCGCTGCAGTA
AGAAATGAAAAGATAGGTTTTATATTTCAAGGCTTTAATCTTATTCCAGATCTTAATTTGGCCGAGAACGTCGAAGTGCC
ACTGCGCTACCGAGGCTTTAATGCTAAGGAACGTCAGCGTCGAGTAAAACAAGCCTTAGAACAAGTTGGCCTAGGCGCCA
GAATGAAGCACATGCCAACTCAGCTTTCTGGTGGTCAGCAGCAAAGGGTTGCTATCGCTCGAGCCCTCGCTGGAGAGCCC
AGATTCTTACTTGCCGATGAGCCCACGGGTAATCTTGATAGCTTGATGGCACGCCAAGTGATGGAGCTACTGGAGAACAT
TAATAAAGCGGGCACCACCATCATCATGGTGACCCATGACGGTGAGCTTGCCCGCCGCGCGCAGCGTAATATTCAGATAG
TGGATGGCCAAGTGTGCGATTTTAACAGCTATCAAAAGTCAGAGCGTGCAGTGGTCGATCTTGTCGCTAACGCTGGCCGC
TAA

Protein sequence :
MLTMKNISKVFKTDLVETHALRDFNLTVNEGEFVAVTGPSGSGKTTFLNIAGMLEGFTHGEYFLDGENVSNLTDNKSAAV
RNEKIGFIFQGFNLIPDLNLAENVEVPLRYRGFNAKERQRRVKQALEQVGLGARMKHMPTQLSGGQQQRVAIARALAGEP
RFLLADEPTGNLDSLMARQVMELLENINKAGTTIIMVTHDGELARRAQRNIQIVDGQVCDFNSYQKSERAVVDLVANAGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 9e-30 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-33 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-34 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sden_2850 YP_563852.1 ABC transporter related NC_012469.1.7686878. Protein 3e-51 50
Sden_2850 YP_563852.1 ABC transporter related NC_008702.1.4606598. Protein 8e-45 50
Sden_2850 YP_563852.1 ABC transporter related CP001581.1.gene798.p Protein 8e-38 45
Sden_2850 YP_563852.1 ABC transporter related CP001581.1.gene598.p Protein 2e-31 41