|
Name : Sden_2645 (Sden_2645) Accession : YP_563647.1 Strain : Shewanella denitrificans OS217 Genome accession: NC_007954 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 3175532 - 3177481 bp Length : 1950 bp Strand : - Note : - DNA sequence : ATGATTGGGCTTAAAATGGATTTTTTACAAAGCATGTTTAGCTTAAAGCGTGCCCATAAGCGTGCTGTGAGCGTTACGAT TGACTCTCTTTTCCTGTGTGTCGCATTCTGGGCAGCGTTATTAGTTAGAGTTGATGATGTTAATGTGTTGGTTAATTCAC AATATTGGCTATTACTTATATTGGTCGTTCCCTTAAGTATCATAGGCTTTATCAAATTTGGTCTATATCGCGCAGTGCTT AGGTACATGGGGTTACAAGCACTCACGGCCATTTTATTAGGCGTAATAATCTCTACGATCGCCTTAGTGTTAATTGCTTA TTATACCGATGCACAACTCCCAAGAACTGTGCCTATCATTTATGCTGCGTTTGCATTAGTTTTTGTGGGCGGCACTCGTG CTATGGTTCGCTCTCTTGTTGGCTCTGGCATGAAGCGTAATGGTGAGCCGGTAATCATTTATGGTGCAGGAGTGAGTGGT CGCCAACTGGTTATGGCATTGGTGCAAAGCCATGAGTATTATCCCTTTGCTTTTGTTGATGATGATGAAGCCGTACAAGG TTCTGTTATTCAGGGAGTACATGTTCATTCTCCTTCTATCATTAAAAAGTTAATTAAGCAGAAAGCGGCAACAAAAGTAT TATTGGCAATTCCTAGCGCTTCTAGATCCAGGCGACAGGAGATATTACTTCAGTTAGAGCCATTATCGGTACAAGTACTC ACTTTGCCTGCGATGGCTGATCTGGTTAGTGGTAATAAGCTCTATAGCGACATTAAAGAAGTCGAAATCGATGACTTATT AGGCCGTGATTCGGTGACTCCAAGGCAAGATCTATTAACCGCGAACATTAAAGATAAAGTCGTCATGGTAACTGGCGCTG GCGGTTCTATTGGTTCAGAACTCTGTCGTCAAATTTTAAAGCAAGCGCCTAAAAAGTTAGTTCTCTTTGAGCTGTCTGAA TTTGCGCTCTATGCCATCGAATCAGAACTAACAGCTACAGCGATTGAATTAGGGTTAACAGTACGCATTTTACCTATGAT GGGCTCGGTACAAAAAGAGAATCGGGTTCAGGCGGTAATGGAAGCATTTGGGGTACAAACCGTATACCACGCAGCAGCCT ATAAGCATGTCCCCTTAGTTGAGCACAATGTGGTAGAAGGCGTACGTAATAATGTATTTGGTACCCTGTATACTGCAAGA GCCGCGATTAAAGCTAAGGTTGAGACATTCGTGCTTGTATCAACGGATAAAGCCGTGCGACCCACCAATGTGATGGGTAC CACTAAGCGTATGGCTGAGCTGGTATTGCAGGCTTTTGCCAAAGAGAAACACAGTACGCGTTTTTGCATGGTGCGTTTTG GCAATGTACTCGGCTCATCAGGCTCTGTAGTGCCTTTATTTCGCAAACAAATTGCTAATGGCGGCCCTGTTACTGTCACG CACCCCGAAATTACCCGCTTCTTTATGACAATACCCGAAGCCTCTCAACTTGTTATCCAGGCCGGCGCTATGGGTAAAGG CGGAGATGTGTTTGTACTGGATATGGGAAAGTCGGTTAAAATTGTCGATTTAGCCACTAAAATGATCCGTTTAAGCGGCT TTGAAGTGAAGAACGAATTAAATCCTGATGGTGATGTGGCCATAGAGTTTACGGGTTTACGTCCAGGCGAAAAACTCTAT GAAGAGTTGCTTATTGGTGATGATGTCACTGGCACCGAGCACGAACGTATCATGACTGCCAACGAATTGTATTTAAGCTG GGCTAATTATTCAGCTATTTTGGATAAATTGGATTTAGCCTGTCATGAGTTTGATCATGAGAGAATTCGCGCAATTCTGT TAAGCACCCCAACAGGCTTTGCCCCTACTGATGGTATTTGTGATCTGTTGTTTCAGCAGAGAGAAAAAATATCTGGTACT AAAAAGAATGTGGTGAATTTCGTATTATGA Protein sequence : MIGLKMDFLQSMFSLKRAHKRAVSVTIDSLFLCVAFWAALLVRVDDVNVLVNSQYWLLLILVVPLSIIGFIKFGLYRAVL RYMGLQALTAILLGVIISTIALVLIAYYTDAQLPRTVPIIYAAFALVFVGGTRAMVRSLVGSGMKRNGEPVIIYGAGVSG RQLVMALVQSHEYYPFAFVDDDEAVQGSVIQGVHVHSPSIIKKLIKQKAATKVLLAIPSASRSRRQEILLQLEPLSVQVL TLPAMADLVSGNKLYSDIKEVEIDDLLGRDSVTPRQDLLTANIKDKVVMVTGAGGSIGSELCRQILKQAPKKLVLFELSE FALYAIESELTATAIELGLTVRILPMMGSVQKENRVQAVMEAFGVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAR AAIKAKVETFVLVSTDKAVRPTNVMGTTKRMAELVLQAFAKEKHSTRFCMVRFGNVLGSSGSVVPLFRKQIANGGPVTVT HPEITRFFMTIPEASQLVIQAGAMGKGGDVFVLDMGKSVKIVDLATKMIRLSGFEVKNELNPDGDVAIEFTGLRPGEKLY EELLIGDDVTGTEHERIMTANELYLSWANYSAILDKLDLACHEFDHERIRAILLSTPTGFAPTDGICDLLFQQREKISGT KKNVVNFVL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 5e-83 | 43 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-81 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sden_2645 | YP_563647.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 2e-120 | 53 |
| Sden_2645 | YP_563647.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 9e-82 | 46 |
