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Name : Sden_2400 (Sden_2400) Accession : YP_563403.1 Strain : Shewanella denitrificans OS217 Genome accession: NC_007954 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 2853097 - 2855103 bp Length : 2007 bp Strand : - Note : decatenates replicating daughter chromosomes DNA sequence : ATGCGACTCTACATTGCCGAGAAACCAAGCCTTGGGCGGGCCATCGCCGATGTGCTGCCAAAGCCCCATAAGAAAGGCGA TGGTTTTATTACCGCCGCCAATGGTGACTGCGTGTCTTGGTGTATTGGCCATCTATTAGAGCAAGCGGAGCCAGATGCCT ATGATGTGGCGTTTAAATCCTGGAAATTGGAGCACTTGCCCATTATCCCAACCCAGTGGCAGCTAAAACCTAAATCATCG ACCCGCAGTCAATTAAGCGTGCTTAAAAAGTTAGTTAAACAAGCCACTCACTTAGTAAATGCGGGAGATCCAGACCGAGA AGGTCAGCTGCTGGTGGATGAAGTGATTGCCTATCTTGGGGTCAAGGGGGATAAGCTCAATCAAGTGCAGCGGTTGCTTA TCAGTGACTTAAACCCGCAAGCTGTACAGCGAGCGCTAAATCAACTCAAGAGTAATCGAGATTTTATTCCGCTGTCCACC TCGGCCCTTGCCCGCAGCCGCGCCGATTGGCTCTATGGCATGAACATGACTCGGGCCTACACAATTCAAGGCAAGAAAGT GGGTTATCAAGGCGTGCTCTCGGTGGGGCGAGTGCAGACGCCTCTGCTTGGGTTAGTGGTTAGGCGAGATGAAGAAATTG AGGCTTTTGTGCCTAAGCCTTTCTATGAAGTGTTAGCCCATTTATTAACTGATAAGCAGCAAGGCTTTACCGCTAAATGG CAACCAAGCGCGGCCTGCGAGCCCTATCAAGATGAAGAAGGCCGAGTGTTAGTGAAGGGCTTAGGGCAGAATGTAGTGGA GCGCATCAGCGGCCAGCCCGCTCAAGTCACAGGGCTTGTGGCTCAAGATAAGCGTCAGGCGGCGCCCTTGCCTTATAGTT TGTCTTCCTTGCAAATCGATGCTGCCAAGCGTTTTGGCTTAAGCGCTAAAGAGGTGCTAGATACTTGCCAGAGCCTGTAT GAACGGCATAAATTGATTACCTATCCGCGCTCAGATAGCCGCCATTTACCTGTGGAGCAATTCTCACTTGCCCCAAGTGT GATTAACGCTGTCATTAAGGGGGCGCCAACGCTGATTAGTCACACCGATGCGCCTAACCCTAAGCTTAAATCTAAAGCCT GGGATGATAGTAAAGTTGAAGCCCATCACGCTATTATCCCTACAGAGAAAATCGCACACTTATCGGCCTTGAGCATGAAT GAAGCGCGGCTGTATCAGCACATCGCTCGTCAATATTTGGCGCAGTTTTATCCTGCTTACCAATACGCAGAAACCCAGGT TGAAGTCACGATTGCTGGCGGGATATTTACCACTAAGGCAAGGCAGAACAAGTCGTTGGGATGGAAGAGCTTATTTAGCA ACAATAACAAAATTGTGGAACATAACACTGAAAATAATCAAGAGGGAGAGCCAGAGTCTCAAACCTTGCCCGCACTCAAA AAAGGTCAATGGCTCAACTGCGAACGAGGAGAACTGCTTGAGAAAATGACCCAAGCACCGAAGCATTTTAGCGATGCAAG TTTACTTAGCGCCATGACGGGCATTGGCCGTTTTGTCACTAATGTAGAGATAAAAAAAATCTTAAAAGACACCGACGGTA TAGGCACTGAAGCCACACGAGCTGGGATTATCGAATTATTATTTAAGCGCGGTTATTTATTACGCCAAGGTAAGTCTATC TTGGCTACGCCAGTGGGCCGGGGGCTGATAAATAGCCTGCCAATGAGTGCGACCACCCCAGATATGACAGCATTGTGGGA GGCAAGCCTTGATAAAATTAGCCATAAGACCATGCGCTACCAAGCGTTCATGGCGCCACTGATCCAGCAGCTTAGCGAGC TCATAGGACAAGCGGCGAGCGAGTTACCCAGGGCCTTGCAAGGGCTTGCAAGTCCATCAAAGGGTAAAGGTTTCCCTAAG AAAAAATCGGCTTACTCGACTAAATCAAGCGGGAAATACAAGGCGAAAAATGCCAAAGCGGGCACGGTAGCAAAGAAAAA ATCATAG Protein sequence : MRLYIAEKPSLGRAIADVLPKPHKKGDGFITAANGDCVSWCIGHLLEQAEPDAYDVAFKSWKLEHLPIIPTQWQLKPKSS TRSQLSVLKKLVKQATHLVNAGDPDREGQLLVDEVIAYLGVKGDKLNQVQRLLISDLNPQAVQRALNQLKSNRDFIPLST SALARSRADWLYGMNMTRAYTIQGKKVGYQGVLSVGRVQTPLLGLVVRRDEEIEAFVPKPFYEVLAHLLTDKQQGFTAKW QPSAACEPYQDEEGRVLVKGLGQNVVERISGQPAQVTGLVAQDKRQAAPLPYSLSSLQIDAAKRFGLSAKEVLDTCQSLY ERHKLITYPRSDSRHLPVEQFSLAPSVINAVIKGAPTLISHTDAPNPKLKSKAWDDSKVEAHHAIIPTEKIAHLSALSMN EARLYQHIARQYLAQFYPAYQYAETQVEVTIAGGIFTTKARQNKSLGWKSLFSNNNKIVEHNTENNQEGEPESQTLPALK KGQWLNCERGELLEKMTQAPKHFSDASLLSAMTGIGRFVTNVEIKKILKDTDGIGTEATRAGIIELLFKRGYLLRQGKSI LATPVGRGLINSLPMSATTPDMTALWEASLDKISHKTMRYQAFMAPLIQQLSELIGQAASELPRALQGLASPSKGKGFPK KKSAYSTKSSGKYKAKNAKAGTVAKKKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 7e-108 | 41 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 2e-115 | 41 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 1e-107 | 41 |
