Gene Information

Name : fliP (Sden_1336)
Accession : YP_562345.1
Strain : Shewanella denitrificans OS217
Genome accession: NC_007954
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1556270 - 1557013 bp
Length : 744 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGCGATATTGGCTGGGGCTTGCTCTCCTAATTGGTTTAGGTTTTTCTCCTGCAGGATTTGCCGAAGGCATCTTGCCCGC
TGTCACAGTGAAAACGGGCGCCGATGGCTCGGCAGAATACTCTGTGACCATGCAGATTTTAATTTTGATGACGGCCATGA
GCTTTATTCCTGCCATGGTTATCATGTTAACGTCATTCACCCGCATTATCGTGGTGTTGTCCATCCTGCGCCAAGCGCTG
GGTTTGCAGCAGACACCTTCAAATCAAGTGTTAATAGGCATCAGCCTATTTATGACCTTTTTTATCATGTCGCCAGTGTT
TGATAAGATTTATACCGAGGCCGTTGAGCCATATATCAATGAAACCATGACACTGCAACAATCCTATGAAGTGGGTAAGC
TGCCGATAAAAAGCTTTATGTTATCTCAGTTAAGATTGACTGATTTGCAAACCTTTGTTGAAATTTCGGGTTATAAGGGA
ATCACATCCCCCGAAGAAGCGCCCATGAGCGTGATTATCCCAGCGTTCATCACCAGTGAGTTAAAAACGGCTTTCCAGAT
AGGGTTTATGTTGTTTATCCCCTTTTTAGTGTTAGATCTTGTGGTGGCTAGCATTTTAATGGCCATGGGTATGATGATGC
TGTCGCCTATGATCGTTTCATTACCTTTTAAGATCATGCTATTTGTGCTGGTAGACGGTTGGAGCCTAGTGATGGGCACC
TTAGCGAATAGCTTTGGTATTTAA

Protein sequence : 
MRYWLGLALLIGLGFSPAGFAEGILPAVTVKTGADGSAEYSVTMQILILMTAMSFIPAMVIMLTSFTRIIVVLSILRQAL
GLQQTPSNQVLIGISLFMTFFIMSPVFDKIYTEAVEPYINETMTLQQSYEVGKLPIKSFMLSQLRLTDLQTFVEISGYKG
ITSPEEAPMSVIIPAFITSELKTAFQIGFMLFIPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGT
LANSFGI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-23 41
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-20 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-20 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_562345.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-63 64
fliP YP_562345.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-55 61
fliP YP_562345.1 flagellar biosynthesis protein FliP VFG2494 Protein 3e-55 55
fliP YP_562345.1 flagellar biosynthesis protein FliP VFG2338 Protein 8e-51 52