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Name : Sden_0122 (Sden_0122) Accession : YP_561142.1 Strain : Shewanella denitrificans OS217 Genome accession: NC_007954 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 133422 - 134966 bp Length : 1545 bp Strand : + Note : - DNA sequence : ATGACTGATCAATTGGCACAAGTGTCCAACGACTTAACCTTAGAGCTTGAAGATGCCGATGAGGTGTTTCACTCCAATAG CAAGGAGCGCTTGCCGTTTGCATTTTCTCAGCGTTTTCAATTGGTACTGGCTAAGGAACTGGGGGTGTTAAGTCTGTTTT ATACTGACAATACTCCGCTCAATGCCATGCTAGAAGTACGCCGCTATACCGCCGCCGAGCTGCCTTTGATTAAGCTTGAG GTGAATAAGTTTGAGTCTAAACTCACTCAAGCTTATCAGGCGAATTCCTCCGAAGCACAGCAGCTGATGGAAGACATAGG CAACGAGATGGATTTATTCACCCTTGCCGAAGAAATGCCTCAGACCGAAGATTTATTAGAAGGGGACGATGATGCGCCTA TCATCAAGCTGATTAATGCCTTGTTATCTGAAGCCATCAAAGAAGAAGCCTCAGATATCCATATCGAGACCTATGAAAAG CAATTAATCGTGCGTTTTCGCATTGATGGTGTGCTCAAAGAAGTGCTCAAGCCTAATCGCAAACTGTCCTCCTTACTGGT ATCGCGCATTAAGGTCATGGCCCGCCTGGATATCGCCGAAAAACGTGTGCCCCAAGATGGACGTATCTCGCTGCGCATCG CGGGTCGTGCAGTGGATGTGCGGGTATCGACCATGCCATCGAGTCATGGCGAGCGGGTGGTGCTGCGTTTACTGGATAAA AACACCGGTAATTTAGATCTTAAACAGTTAGGCATGACGCAAGGCATACGTGAGAAATTTGATGCGCTTATCCGCAGACC TCACGGCATTATCTTGGTCACAGGCCCCACAGGCTCGGGTAAGAGTACTACCTTGTATGCCGGCCTTACCGAAATTAACT CTAAAGATACCAACATATTAACCGTTGAAGACCCCATCGAGTATGAACTTCATGGGGTCGGCCAGACGCAAGTAAATATC AAGGCTGATATGACCTTCGCCCGTGGTCTGCGTGCGATTCTACGTCAAGATCCCGATGTGGTCATGATAGGTGAAATTCG TGACTTAGAAACCGCCCAAATTGCGGTGCAAGCCTCATTAACCGGTCACTTAGTGATATCAACCCTGCATACCAATACTG CCTCTGGTGCCATTACCCGTCTGCAAGACATGGGGGTCGAGCCTTTCTTGGTGTCTTCGAGTCTCTTAGGGGTGTTAGCC CAGCGCTTGATCAGAACCTTGTGCCCAAGTTGTAAGGTAGAGCATGAGCCCGATATGCGAGAGCGTGAGCTGTTAGGGAT TAGTGACAGTGACCCAAGGCATATATACCGTGCCAATGGCTGTAAGGCTTGTGGTAATAACGGTTACCGTGGCCGTACGG GTATTCATGAATTACTGACAGTGGATGACAGCGTGCGTGAACTTATCCATGGGGGTAAGGGCGAGCTTGCTATCGAGCGT TATATTCGTCAAAGCGTGCCTAGCATACGTCACGATGGCATGAGCAAGGTGCTCGCCGGGGTGACCACACTTGAAGAAGT GCTACGTGTGACCCGCGAGGAGTAA Protein sequence : MTDQLAQVSNDLTLELEDADEVFHSNSKERLPFAFSQRFQLVLAKELGVLSLFYTDNTPLNAMLEVRRYTAAELPLIKLE VNKFESKLTQAYQANSSEAQQLMEDIGNEMDLFTLAEEMPQTEDLLEGDDDAPIIKLINALLSEAIKEEASDIHIETYEK QLIVRFRIDGVLKEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIAGRAVDVRVSTMPSSHGERVVLRLLDK NTGNLDLKQLGMTQGIREKFDALIRRPHGIILVTGPTGSGKSTTLYAGLTEINSKDTNILTVEDPIEYELHGVGQTQVNI KADMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTNTASGAITRLQDMGVEPFLVSSSLLGVLA QRLIRTLCPSCKVEHEPDMRERELLGISDSDPRHIYRANGCKACGNNGYRGRTGIHELLTVDDSVRELIHGGKGELAIER YIRQSVPSIRHDGMSKVLAGVTTLEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-154 | 64 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-154 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sden_0122 | YP_561142.1 | type II secretion system protein E | VFG2048 | Protein | 6e-154 | 64 |
| Sden_0122 | YP_561142.1 | type II secretion system protein E | VFG0182 | Protein | 1e-148 | 64 |
| Sden_0122 | YP_561142.1 | type II secretion system protein E | VFG1876 | Protein | 4e-137 | 58 |
| Sden_0122 | YP_561142.1 | type II secretion system protein E | VFG2426 | Protein | 3e-79 | 47 |
| Sden_0122 | YP_561142.1 | type II secretion system protein E | VFG0112 | Protein | 3e-85 | 45 |
