|
Name : Sden_0121 (Sden_0121) Accession : YP_561141.1 Strain : Shewanella denitrificans OS217 Genome accession: NC_007954 Putative virulence/resistance : Virulence Product : type II and III secretion system protein Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 131297 - 133414 bp Length : 2118 bp Strand : + Note : - DNA sequence : ATGAATAACAAAGGGATCCGCCGTAAGCTACTGCTGAGTGCGTTGACAGGCGCTGCATTACTCACATCACAACTAGCGTG GTCGGAACAATATGCTGCCAACTTTAAAGGCACAGACATTCAAGAATTCATTAATATTGTAGGTAAAAACCTCAATAAGA CCATAGTGGTCGACCCCACTATTCGCGGTAAAATCAATGTCCGCAGTTATGATCTGCTCAATGATGATCAATACTATCGT TTCTTCCTCAACGTATTGCAAGTCTATGGCTATGCGGTTGTTGAGATGGAAAATAACATCATTAAGGTTATCAAAGATAA AGACGCTAAAGTGTCGGCAATCCGTATTGCCGATGATAAAGTCCCTGGGGTTGGCGATGAAATGGTCACTCGTATCGTGG CGCTTTACAACACAGAGGCGAAGCAACTTGCGCCATTACTGCGCCAACTTAACGATAACGCTGGCGGCGGTAACGTAGTT AATTATGACCCATCGAACGTGATGATGATAACCGGCCGTGCCGCCGTGGTGAATAAGATCGTTGAAATCATTCGCCGAGT CGATAAACAAGGGGACACTGAAGTTCAAGTCGTCCCACTCGAATATGCTTCAGCCGGCGAGATGGTGCGTATTATCGACA CCCTTTACCGCGCCACAGCCAACCAATCGCAAATGCCGGGTCAGTCACCGAAAGTGGTCGCCGATGAGCGTCTCAATGCT GTGATTGTCAGTGGTGATGAGAAGAGTCGCCTGCGGGTGGTGTCACTTATTCGTAAACTGGATGCCGAGCAAGCCAGTAC CGGCAATACCAAGGTGCGTTACTTGCACTATGCCAAGGCCGAAGATTTAGTCGAAGTGTTAACCGGTTTTGCCGAGCGTT TACAAGAAGGCGGTGATAAGGGTGCCCAGCAGGGCGGCGCTAAGCGTCGTAATGATATCAATATCATGGCCCATGTGGAC ACCAATGCCTTGGTTATCAGCGCCGAGCCTGATCAGATGCGCACCATAGAAAGCGTGATTAATCAGCTAGATATTCGCCG TGCGCAAGTTTTGGTTGAGGCCATTATTGTTGAAGTTGCCGAGAATGATGATGTTGGTTTTGGCATTCAATGGGCCAGCA TGGCTGGCGGCGGCACTCAGTTTAACAACTTAGGCGCCACCATAGGTGAAGTCGGTGCGGGTGTGTGGGCTGCCCGTGAA AAAGACGTTGCTCAGGTGACTACGATTGATGCGAATAATAAGCCTGTAGTGAGTAATAATCCTAAAACCGAAGGGGACTA CACCTTGCTAGCCCAAGCGTTAGGCAAGGTTAACGGTATGGCTTGGGGTGTGGCAAGCGGCGATTTTGGCGCGCTTATCC AAGCCGTGTCCAGCGATACTAACTCTAACGTATTAGCCACACCTTCGATTACCACCTTAGATAATCAAGAAGCTTCTTTC ATCGTGGGTGACGAAGTGCCTATCTTAACTGGCAGCCAGAACTCCAGTAATGGCAATGCTAACCCATTCCAGACGGTTGA GCGTAAAGAGGTCGGCGTTAAGCTTAAGGTGACACCGCAGATCAACGAAGGCACGGCGGTTAAGCTCACCATTGAACAAG AAGTGTCAGGTATCAATGGTAAGACCGGGGTGGATGTCACCTTCGCGACTCGCCGTCTTACGACTACGGTAATGGCAGAT TCGGGTCAAATTGTTGTTTTAGGCGGTTTGATTAACGAAGAAGTGCAAGAAAGCATCCAGAAAGTGCCTTTCTTGGGCGA CATTCCCTTTATTGGTCATCTGTTTAAGTCGTCGTCTAGCAGTAAGAAAAAGAAAAACTTGATGGTGTTTATCAAGCCCA CCATTATTCGTGATGGTGTGATTATGGAAGGTATCGCGGGTCGTAAATACAATTATTTCAGAGCTCTACAACTTGAGCAG CAGGTGCGCGGCGTTAACTTAATGCCAAATACCGAAGTGCCAGTGCTGGAAGAGTGGAACCAGGATGCGTATATCCCTGA AGACGTTAATCGTGTGCTTGACAGATACAAGGATGGCAAAGGCCTAGATACAGACTTACGCAATAGCGATGCGGCGCTAA AGGCCATTTCAGACAATAAAGCATCGGCCGATGAGTGA Protein sequence : MNNKGIRRKLLLSALTGAALLTSQLAWSEQYAANFKGTDIQEFINIVGKNLNKTIVVDPTIRGKINVRSYDLLNDDQYYR FFLNVLQVYGYAVVEMENNIIKVIKDKDAKVSAIRIADDKVPGVGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVV NYDPSNVMMITGRAAVVNKIVEIIRRVDKQGDTEVQVVPLEYASAGEMVRIIDTLYRATANQSQMPGQSPKVVADERLNA VIVSGDEKSRLRVVSLIRKLDAEQASTGNTKVRYLHYAKAEDLVEVLTGFAERLQEGGDKGAQQGGAKRRNDINIMAHVD TNALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVAENDDVGFGIQWASMAGGGTQFNNLGATIGEVGAGVWAARE KDVAQVTTIDANNKPVVSNNPKTEGDYTLLAQALGKVNGMAWGVASGDFGALIQAVSSDTNSNVLATPSITTLDNQEASF IVGDEVPILTGSQNSSNGNANPFQTVERKEVGVKLKVTPQINEGTAVKLTIEQEVSGINGKTGVDVTFATRRLTTTVMAD SGQIVVLGGLINEEVQESIQKVPFLGDIPFIGHLFKSSSSSKKKKNLMVFIKPTIIRDGVIMEGIAGRKYNYFRALQLEQ QVRGVNLMPNTEVPVLEEWNQDAYIPEDVNRVLDRYKDGKGLDTDLRNSDAALKAISDNKASADE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-128 | 50 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 9e-137 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sden_0121 | YP_561141.1 | type II and III secretion system protein | VFG2047 | Protein | 1e-127 | 50 |
