|
Name : Sden_1207 (Sden_1207) Accession : YP_562216.1 Strain : Shewanella denitrificans OS217 Genome accession: NC_007954 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 1403468 - 1406056 bp Length : 2589 bp Strand : - Note : This protein performs the mismatch recognition step during the DNA repair process DNA sequence : ATGACAAGTATCGATTCTTCTGAGTTAGAAAAGCACACCCCCATGATGCGTCAGTATTTGACCATGAAAGCCGCCCATCC TGAGATGCTGCTATTTTATCGCATGGGAGATTTTTACGAACTTTTCTATGAAGATGCCAAACTTGCCTCAGAACTGCTAG GCATATCTTTAACTGCTCGCGGTAAAAGTGGCGGCGATCCTATCCCAATGGCGGGCTTGCCTTATCATGCAGTTGAAGGC TATTTAGCCAAACTGGTTCAAATTGGTCAGTCCGTGGCGATTTGTGAGCAAGTGGGCGATCCTGCTACCTCGAAAGGGCC AGTAGAGCGCAAAGTGGTGCGCATTGTCACTCCAGGCACCTTAACCGATGAAGCCTTACTGCAAGAGCATCAAGACAACC TATTAGCTGCCATATATCAAGGCAAGGTAGGCTTTGGTTACGCGACGCTCGATATTTCATCGGGACGTTTTGTGATTGCA GAGTTAGACACTCAAGAGGCCCTAGAAGCTGAATTGCAGCGCACCCGCCCTGTGGAACTGCTCTACAGTGAAGACTTTAG CAACCTAAGCTTAATCAATCATTTAAAAGGCATACGTCGCCGCCCTGAATGGGAATTTGATTTTGATACCAGTGTGAACT TGTTGCTGCAACAATTTGGCACCAAAGATTTGCATGGTTTTGGTATTAGTGATGCGCGCCTTTCCTTACAGGCCGCGGGC TGCTTAATGCAGTACGTGAAAGACACCCAGAAGACAGCCCTGCCCCACATAAATGCCATAGTGCGCTTCAATCAGGCGGA TTCGATCATTTTAGATGCGGCTACCAGACGTAATTTAGAGCTAACCCAGAATTTATCAGGCGGCCGCGAGCACACCTTAG CCTGGGTATTGGACAACACCGCCACCCCCATGGGAAGCCGTATGCTGCAGCGCTGGTTACACCAGCCACTAAGAGACAAC AACATAATAGCCAGCCGCCACAATGCGGTGGCTGAACTCATCGAAGCCAATTTATTTGACGAATTGCATCAGCAGCTAAA ATCATTAGGTGATATCGAACGCATCATGGCTCGCCTCGCGCTTCGAAGTGCACGGCCACGGGATTTCGCTCGCCTTCGCC AAGCGTTAAGTCTCTTGCCTGAATTGCAACACACCTTAGGCCAATGCAAAACCCCACTGCTTACTAAGTTAGCCCAGTTG ATTGGCGAGTTTCCTGCCGAGCATGAGTTACTTGAGAATGCCATAGTCGATAGCCCGCCTATGCTTATTCGCGATGGCGG GGTTATTCGCAGCGGTTATCACAGCGAACTTGATGAGTGGCGCGCCTTAAGTGAAGGCGCCAGTGATTACTTAACTGAGC TTGAAGCCAGAGAAAAACAAGCCACGGGGATCAGCACCTTAAAAGTTGGCTATAACCGCGTCCATGGTTACTACATAGAA GTCAGCCGCCTTCAAGCCGATAAAGTGCCCTTAAGCTATCAGCGCCGTCAAACCTTAAAAGGCACTGAGCGCTACATAAC CCCTGAGCTTAAAGTGTATGAAGAAAAAGTCCTCTCAAGCCAAGGTAAGGCTCTAGCGTTAGAGAAACAGCTGTGGGATC AATTGTTTGATTTAATTTTGCCTAAGCTTAATGAGCTTAGGGACTTTGCCAATGCTGCCGCCGAGCTTGATGTCATTTGC TGTTTTGCCGAGCGCGCCGAAAGCCTGCATTACACTCAGCCGCAAATGGTCTCAAAAACCGGCATTCAAATTAATGCTGG CCGCCATCCCGTAGTTGAGCGCGTTAGCAGCACAGCCTTTATTGCCAACCCCGTCAACTTAGATGCAAAGCGTCACATGC TTATCGTCACCGGCCCGAACATGGGCGGTAAATCTACCTATATGCGCCAAGTGGCCTTGATAAGTTTGATGGCCCACATT GGCTGTTTTGTTCCTGCTGACAGCGCCGTCATTGGTCCTATCGACAGAATTTTCACCCGCATTGGCGCCTCTGATGACTT GGCCTCTGGCCGCTCAACCTTTATGGTCGAAATGACAGAAACTGCCAACATTCTCCATAATGCCACCAGTCAAAGTTTGG TATTAATGGATGAGATAGGCCGGGGCACCTCAACCTATGATGGTTTGTCCCTCGCTTGGTCAGCGGCTGAGTATTTAGCA TTGCAAATCAAAGCCATGACGCTATTTGCGACCCATTATTTTGAACTAACACAATTACCAGATTTGATCCCCGGCGCCAA CAATGTGCATCTAGATGCCATAGAGCACGATGACACCATCGCCTTTATGCATGCAGTGCAAGAAGGCGCTGCCAGTAAGA GTTATGGCCTGCAAGTCGCCGCATTAGCTGGGGTGCCAAGCCATGTTATTCAAGCCGCTAAACATAAACTGCATCAGCTA GAGAGCCGTGATAATCAGGCATCACCCGCTGTCGCCAGCGCACCGCAACAACAGAGTCTGAGTCTAAGCCCTGCCCCTAT GATGGGTGAAAAAGCTCTGAATAAGCTAACCACGATTAATCCCGATGAACTCAGCCCAAAACAAGCCTTAGACTTGCTCT ACGAGCTGAAAAAACTCGCTAAAAGCTGA Protein sequence : MTSIDSSELEKHTPMMRQYLTMKAAHPEMLLFYRMGDFYELFYEDAKLASELLGISLTARGKSGGDPIPMAGLPYHAVEG YLAKLVQIGQSVAICEQVGDPATSKGPVERKVVRIVTPGTLTDEALLQEHQDNLLAAIYQGKVGFGYATLDISSGRFVIA ELDTQEALEAELQRTRPVELLYSEDFSNLSLINHLKGIRRRPEWEFDFDTSVNLLLQQFGTKDLHGFGISDARLSLQAAG CLMQYVKDTQKTALPHINAIVRFNQADSIILDAATRRNLELTQNLSGGREHTLAWVLDNTATPMGSRMLQRWLHQPLRDN NIIASRHNAVAELIEANLFDELHQQLKSLGDIERIMARLALRSARPRDFARLRQALSLLPELQHTLGQCKTPLLTKLAQL IGEFPAEHELLENAIVDSPPMLIRDGGVIRSGYHSELDEWRALSEGASDYLTELEAREKQATGISTLKVGYNRVHGYYIE VSRLQADKVPLSYQRRQTLKGTERYITPELKVYEEKVLSSQGKALALEKQLWDQLFDLILPKLNELRDFANAAAELDVIC CFAERAESLHYTQPQMVSKTGIQINAGRHPVVERVSSTAFIANPVNLDAKRHMLIVTGPNMGGKSTYMRQVALISLMAHI GCFVPADSAVIGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATSQSLVLMDEIGRGTSTYDGLSLAWSAAEYLA LQIKAMTLFATHYFELTQLPDLIPGANNVHLDAIEHDDTIAFMHAVQEGAASKSYGLQVAALAGVPSHVIQAAKHKLHQL ESRDNQASPAVASAPQQQSLSLSPAPMMGEKALNKLTTINPDELSPKQALDLLYELKKLAKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 0.0 | 62 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sden_1207 | YP_562216.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 0.0 | 65 |
