Gene Information

Name : Sden_0109 (Sden_0109)
Accession : YP_561129.1
Strain : Shewanella denitrificans OS217
Genome accession: NC_007954
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 120323 - 121000 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAATCTTAATCATTGAAGATGATGCCACCACACAAAGCTATTTAGTCGAAGGGTTTGCGGCTCAGAATATTGCCAC
TGACACCGCCTCCGACGGCCAAGAAGGTTTACACCTTGCTAGGCACAATAGTTACGATTTAATCGTGTTAGATCGCATGT
TGCCAAAGCTTGATGGTTTGACCTTGTTAGGCGCCTTACGCAGCAGTGGCAACAGCACCCCAGTGTTGATCCTCTCGGCG
CTTAACCATGTGGATGAAAGAGTCAAAGGTCTTCGGGCCGGTGGCGATGATTACATGACTAAGCCCTTCGCCTTCGCTGA
GCTGTTAGTCAGGGTAGAGAAACTGACCCAAAGAAATCAAGGTATAGCAGCACCGGCTGAATTGGTTGTCGGTCAGCTCA
GAATGGAGTTATTAACACGAGTGGTGACCTTAGCTGAGCATGAACTTATGCTGCAGCCTAAGGAGTTTCAATTGCTTAAA
TACCTAATGGAACACCCGAATAAGGTGATTAGTCGTACCTTATTGTTTGAAGCCGTGTGGGATTATCACTTCGATCCCAG
AACCAATGTCATCGATGTGCATATTGCTAAGCTCAGACGCAAGTTTGAGGAAATTGGCTTCCCCGAGATGATAGAGACAG
TCAGAGGAGCCGGTTATCGCCTCAGCAAAGGGCATTAG

Protein sequence : 
MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGLTLLGALRSSGNSTPVLILSA
LNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQGIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLK
YLMEHPNKVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRLSKGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-38 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-37 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sden_0109 YP_561129.1 response regulator receiver BAC0347 Protein 3e-43 44
Sden_0109 YP_561129.1 response regulator receiver BAC0111 Protein 7e-46 44
Sden_0109 YP_561129.1 response regulator receiver BAC0197 Protein 4e-39 43
Sden_0109 YP_561129.1 response regulator receiver BAC0308 Protein 1e-40 42
Sden_0109 YP_561129.1 response regulator receiver BAC0125 Protein 8e-40 41
Sden_0109 YP_561129.1 response regulator receiver BAC0083 Protein 4e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sden_0109 YP_561129.1 response regulator receiver VFG1389 Protein 4e-34 45
Sden_0109 YP_561129.1 response regulator receiver VFG0596 Protein 1e-38 43