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Name : lysS (Bxe_A1561) Accession : YP_559446.1 Strain : Genome accession: NC_007951 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 3187844 - 3189385 bp Length : 1542 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACCGAACCGACCCAACCGAACGCGGCCCAGCCTAATGTCGTACCCGAGGTGGACGACAACAAGATCATCGCCGAGCG CCGCGAAAAGCTGCGCGAGCTGCGTGAGCAAGGCGTCGCCTATCCGAACGATTTCCGCCCCACGCATCACGCCGAAGATT TGCAAGCGCAATACGAGCACTCCGACAAGGAAGCGCTCGAAGCGAATCCGCTCGAAGTCGCGATCGCCGGCCGCATGATG CTCAAGCGCGTGATGGGCAAGGCGAGCTTTGCGACCGTGCGCGACGGCTCGGGTCAGATCCAGTTCTTCATCACGCCCGC CGACGTCGGCCAGGAAACGTACGACGCCTTCAAGAAGTGGGACATGGGCGACATCGTCGCGGCGCGCGGCGTACTGTTCC GCACCAACAAGGGCGAGCTCTCGGTGCGCTGCACCGAACTGCGTCTGCTGTCGAAGTCGCTGCGGCCGCTGCCGGACAAG TTCCACGGGCTGTCCGACCAGGAAATGAAGTATCGCCAGCGCTATGTCGATCTGATCGTCACGCCGGAAACGCGCAAGAC TTTCGTTGCGCGCACGAAGGCGATTTCGTCGATCCGCAAGTTCATGGCCGACGCCGACTTCATGGAAGTCGAAACGCCCA TGCTGCACCCGATTCCGGGCGGTGCGGCGGCCAAGCCGTTCACCACGCACCACAACGCGCTCGACATGCAGATGTTCCTG CGCATCGCGCCGGAGCTGTATCTGAAGCGTCTGGTGGTCGGCGGCTTCGAGCGTGTGTTCGAGATCAACCGTAACTTCCG CAATGAGGGCGTGTCCGTGCGCCACAATCCGGAATTCACGATGATCGAGTTCTACGCGGCGTACACCGACTACAAGTGGC TGATGGACTTCACCGAGCAGTTGATCCGCCAGGCCGCCATCGACGCGCTGGGCACGGCCACCATCACGTATCAGGGCCGC GAACTGGATCTGGCCAAGCCGTTCCATCGCCTCACGATCACCCAGGCGATCCAGAAGTACGCGCCGCAGTACACGAACGA GCAACTCGCCGACAGCGCTTTCCTGCGCACCGAACTGAAGAAGTTCGGCGTGGACGCATCGCAGCCGCAGTTCCTGAACG CGGGCGTCGGTGCGCTGCAACTCGCGCTGTTCGAGGAGACCGCCGAGTCGCAATTGTGGGAGCCGACCTACATCATCGAC TACCCGATCGAGGTTTCGCCGCTCGCGCGCGCGTCGGACAAGGTCGAGGGCATCACGGAGCGTTTCGAGCTGTTCATCAC CGGCCGTGAAATCGCCAACGGCTTCTCGGAGCTGAACGATCCGGAAGACCAGGCGGCCCGCTTCAGGAAGCAGGTCGACC AGAAAGACGCCGGCGACGAAGAAGCCATGTTCTACGACGCGGACTACATTCGCGCGCTCGAATACGGCATGCCGCCGGCC GGCGGTTGCGGCATCGGTATCGACCGTCTGGTCATGTTGCTGACCGATAGCCCGAGCATTCGCGACGTGATTCTGTTCCC GCATCTGCGCCGCGAAGACTGA Protein sequence : MTEPTQPNAAQPNVVPEVDDNKIIAERREKLRELREQGVAYPNDFRPTHHAEDLQAQYEHSDKEALEANPLEVAIAGRMM LKRVMGKASFATVRDGSGQIQFFITPADVGQETYDAFKKWDMGDIVAARGVLFRTNKGELSVRCTELRLLSKSLRPLPDK FHGLSDQEMKYRQRYVDLIVTPETRKTFVARTKAISSIRKFMADADFMEVETPMLHPIPGGAAAKPFTTHHNALDMQMFL RIAPELYLKRLVVGGFERVFEINRNFRNEGVSVRHNPEFTMIEFYAAYTDYKWLMDFTEQLIRQAAIDALGTATITYQGR ELDLAKPFHRLTITQAIQKYAPQYTNEQLADSAFLRTELKKFGVDASQPQFLNAGVGALQLALFEETAESQLWEPTYIID YPIEVSPLARASDKVEGITERFELFITGREIANGFSELNDPEDQAARFRKQVDQKDAGDEEAMFYDADYIRALEYGMPPA GGCGIGIDRLVMLLTDSPSIRDVILFPHLRRED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-127 | 56 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 1e-77 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_559446.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-127 | 56 |
