Gene Information

Name : Bxe_A3122 (Bxe_A3122)
Accession : YP_557909.1
Strain :
Genome accession: NC_007951
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 1480073 - 1480708 bp
Length : 636 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGACCGCCCAGTTCGATCCGCTGCAGAACATCAGCCTGTTTTTCATGCTCGGGCTGCTGCCGCTCGCGGTCGCGATGAC
CACTTCGTTCACGAAGTTCAGCATCGTGCTGACGCTGCTGCGCTCCGCGCTCGGCGTGCAGCAGGCGCCGAGCAATCTCG
TGATCTCGGGCATGGCCCTCGCGGCCACGCTCGTCGTGATGGCGCCGACCCTCTCGAAGATCGAGGCCGCGCTCGATACC
GGCGACGGCGCCATGCCGCGCCCCACCGAACTGGTGCAGGCCGTGCGCGGCCCGCTCGGCGAGTTCATGCTGAAGCACTC
GCGGCTCGAAGAGCGGCAGTTTCTCGTCAGCGCGGCGAAGCGGATCGACCCGGAGCACGAGGCGCACGACACCGACTTGC
AACTGCTGATACCGGCGTTCCTGATCAGCGAGATATCGAGCGGATTCGAAGCGGGCTTTCTGCTCTACATCGCGTTTCTG
GTGGTGGATCTGGTGGTCGCCAACGTGCTGAGCGCAATGGGCATGATGATGCTCTCGCCAAGCACGGTGTCGATCCCGTT
GAAGCTGTTCATCTTCGTGTCGGCGTCGGGCATGTCGAAGCTCATGCACGGCCTCATCGTCAGCTATGCAAAATGA

Protein sequence : 
MTAQFDPLQNISLFFMLGLLPLAVAMTTSFTKFSIVLTLLRSALGVQQAPSNLVISGMALAATLVVMAPTLSKIEAALDT
GDGAMPRPTELVQAVRGPLGEFMLKHSRLEERQFLVSAAKRIDPEHEAHDTDLQLLIPAFLISEISSGFEAGFLLYIAFL
VVDLVVANVLSAMGMMMLSPSTVSIPLKLFIFVSASGMSKLMHGLIVSYAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 9e-37 47
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-37 47
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-37 47
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-37 47
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-37 47
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-37 47
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-37 47
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-36 47
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-24 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-24 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 6e-25 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bxe_A3122 YP_557909.1 type III secretion system protein VFG0044 Protein 1e-39 42
Bxe_A3122 YP_557909.1 type III secretion system protein VFG2494 Protein 1e-30 41
Bxe_A3122 YP_557909.1 type III secretion system protein VFG1259 Protein 2e-29 41