Gene Information

Name : Bpro_3627 (Bpro_3627)
Accession : YP_550429.1
Strain : Polaromonas sp. JS666
Genome accession: NC_007948
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3830121 - 3831017 bp
Length : 897 bp
Strand : -
Note : -

DNA sequence :
ATGAGCTACCAGCTCGTTGAGGACTTGCAAAAGAAGGCTACCCCCCAAGTGCCCGTTAGCCAGACGTGCCGAATCCTCGA
AATTAGCCGCTCCGGATACTACGCGGCGCGTAAGCGCAGCCAGCAGGCACCCGTGGTGTGCGCAGCCAGCGTTCATTTGC
AAGCCGCTTTCGCGGCCAGTGGCCGCGCTTACGGTAGCCGCAGATTGCGTGCTGCGCTGCACGCACGAGGCGTGACCGTG
GGACGTCACCGGGTACGTAGCCTCATGCGTGCCCATGGGCTGCGCTCGGTCTGGAGGCGCAAGTTTGTGCACACCACGAA
CAGCAAGCACGGTCTGGCCGTCTCGCCGAACGTGCTGGACCGGCAGTTCGAGCAAACGGCACCTGATCGGGCTTGGGTTT
GCGACATTACCTATATTCGCACGCGTAGTGGCTGGCTGTATCTGGCTGCAGTGCTGGACTTGCATTCGCGCAGGATCGTG
GGCTGGGCTACTGCTGGAGATATGCAGGCTACGCTGGTGACGACGGCCTTGCAGATAGCCATTGCGCAGCGCAATCCCAG
TCCTGGGCTAATCGTGCACTCAGACAGGGGCACGCAGTACGCGAGTAGCGCGCATCAGGCGCTGCTGAAAAAGCATGGGC
TGGTAGGTAGCATGAGCCGAAAAGGCAACTGCTGGGATAACGCTGTGATGGAGCGTTTCTTCCTGAATTTGAAAATGGAA
CGGGTCTGGCAAAAAGACTACGCAAATCACAGTGAGGCCACAAACGACGTTGCTGACTACATCGTCGGCTTCTACAACTG
TGAACGACTGCATTCAAAACTGGGAAATTTGTCACCCATTGCCTTCGAGCAAAAATCGGCAACTCAACAACCTATCGATG
TGTCCGAAATAACTTGA

Protein sequence :
MSYQLVEDLQKKATPQVPVSQTCRILEISRSGYYAARKRSQQAPVVCAASVHLQAAFAASGRAYGSRRLRAALHARGVTV
GRHRVRSLMRAHGLRSVWRRKFVHTTNSKHGLAVSPNVLDRQFEQTAPDRAWVCDITYIRTRSGWLYLAAVLDLHSRRIV
GWATAGDMQATLVTTALQIAIAQRNPSPGLIVHSDRGTQYASSAHQALLKKHGLVGSMSRKGNCWDNAVMERFFLNLKME
RVWQKDYANHSEATNDVADYIVGFYNCERLHSKLGNLSPIAFEQKSATQQPIDVSEIT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpB CAB61574.1 transposase B Not tested HPI Protein 3e-41 44
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 2e-41 44
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 7e-46 42
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 9e-46 42
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 9e-46 42
unnamed AAF09030.1 unknown Not tested SHI-O Protein 8e-46 42
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 8e-46 42
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 2e-45 42
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 2e-45 42
unnamed AAF09022.1 unknown Not tested SHI-O Protein 2e-45 42
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 1e-45 42
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-45 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-45 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-45 41
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 4e-42 41
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-42 41
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 7e-42 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bpro_3627 YP_550429.1 integrase catalytic subunit VFG1706 Protein 5e-46 42