Gene Information

Name : papF (UTI89_C4888)
Accession : YP_543822.1
Strain : Escherichia coli UTI89
Genome accession: NC_007946
Putative virulence/resistance : Virulence
Product : minor pilin subunit PapF
Function : -
COG functional category : N : Cell motility
COG ID : COG3539
EC number : -
Position : 4790152 - 4790655 bp
Length : 504 bp
Strand : -
Note : -

DNA sequence : 
ATGATTCGTTTATCATTATTTATATCGTTGCTTCTGACATCGGTCGCTGTACTGGCTGATGTGCAGATTAACATCAGGGG
AAATGTTTATATCCCCCCATGCACCATTAATAACGGGCAGAATATTGTTGTTGATTTTGGGAATATTAATCCTGAGCATG
TGGACAACTCACGTGGTGAAGTCACAAAAACCATAAGCATATCCTGTCCGTATAAGAGTGGCTCTCTCTGGATAAAAGTT
ACGGGAAATACTATGGGAGGAGGTCAGAATAATGTACTGGCAACAAATATAACTCATTTTGGTATAGCGCTGTATCAGGG
AAAAGGAATGTCAACACCTCTTACATTAGGTAATGGTTCAGGAAATGGTTACAGAGTGACAGCAGGTCTGGACACAGCAC
GTTCAACGTTCACCTTTACTTCAGTGCCCTTTCGTAATGGCAGCGGGATACTGAATGGCGGGGATTTCCGGACCACGGCC
AGTATGAGCATGATTTATAACTGA

Protein sequence : 
MIRLSLFISLLLTSVAVLADVQINIRGNVYIPPCTINNGQNIVVDFGNINPEHVDNSRGEVTKTISISCPYKSGSLWIKV
TGNTMGGGQNNVLATNITHFGIALYQGKGMSTPLTLGNGSGNGYRVTAGLDTARSTFTFTSVPFRNGSGILNGGDFRTTA
SMSMIYN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
prfF CAD42024.1 PrfF protein Virulence PAI II 536 Protein 1e-73 100
papF_2 NP_757028.1 PapF protein Virulence PAI II CFT073 Protein 4e-67 94
papF YP_854249.1 P pilus minor tip component PapF Virulence PAI I APEC-O1 Protein 2e-67 94
papF AAZ04419.1 P pilus minor tip component Virulence PAI I APEC-O1 Protein 1e-67 94
papF NP_755459.1 PapF protein Virulence PAI I CFT073 Protein 4e-67 94
papF YP_002414010.1 Fimbrial adapter PapF Not tested Not named Protein 5e-67 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
papF YP_543822.1 minor pilin subunit PapF VFG1543 Protein 6e-74 100
papF YP_543822.1 minor pilin subunit PapF VFG0889 Protein 1e-67 94
papF YP_543822.1 minor pilin subunit PapF VFG0900 Protein 1e-67 94