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Name : hofF (UTI89_C3782) Accession : YP_542750.1 Strain : Escherichia coli UTI89 Genome accession: NC_007946 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 3677627 - 3678823 bp Length : 1197 bp Strand : + Note : synonym: b3327, hofF, hopF, EG12885 DNA sequence : ATGAATTATCGCTATCGCGCCATGACCCAGGATGGTCAAAAATTGCAGGGGATCATTGATGCTAACGATGAACGTCAGGC ACGACTGCGGCTGCGTGAAGAAGGGCTTTTCCTGTTGGATATTCGCCCCCAAAAAAGTTCGGGAGTAAAAACACGTCGCC CGAGGATCAGCCATAGTGAACTAACGCTTTTCACCCGGCAGTTGGCAACCTTAAGCGCAGCGGCATTACCCCTGGAAGAG AGCCTTGCCGTAATTGGTCAACAAAGCAGTAATAATCGACTGGCTGACGTGTTAAATCAGGTACGCAGCGCCATCCTTGA AGGGCATCCCCTTTCCGATGCGTTACAACATTTTCCCACGCTTTTCGATTCGCTCTACCGTACCCTGGTAAAAGCGGGCG AAAAGAGCGGTCTGCTGGCCCCGGTGTTGGAAAAGCTGGCTGATTACAATGAAAACCGGCAGAAAATCCGCAGCAAGCTC ATTCAGTCACTGATCTACCCCTGCATGCTCACTACGGTGGCGATTGTGGTCGTGATTATTCTCCTCACTGCTGTCGTGCC CAAAATTACCGAACAGTTCGTGCATATGAAGCAGCAACTGCCACTGAGTACACGCATTCTTTTAGGTCTGAGCGACACGT TGCAACGTACCGGCCCGACATTATTAGCGACAGTATTTATTGTCGCTGTGGGTTTCTGGCTCTGGTTAAAACGCGGCAAT AACCGCCACCGTTTTCATGCCATGTTACTGCGCGTTGCGCTCATCGGCCCGCTGATTTGCGCCATTAACAGCGCACGCTA TCTCCGCACTTTAAGTATTTTGCAATCCAGCGGCGTCCCTCTGCTGGATGGGATGAATTTGTCCACCGAAAGCCTCAACA ACCTCGAAATTCGCCAGCGCCTGGCAAATGCGGCAGAAAACGTTCGCCAGGGTAACAGCATTCATCTTTCACTGGAACAA ACCGCAATTTTCCCGCCGATGATGCTCTACATGGTGGCCTCTGGCGAAAAAAGCGGGCAACTCGGCACGTTAATGGTCAG AGCCGCAGATAACCAGGAGACACTCCAACAAAATCGGATCGCCTTAACGCTCTCCATCTTCGAGCCAGCACTCATTATTA CGATGGCACTGATCGTCCTGTTTATTGTCGTGTCGGTACTCCAACCTCTTCTTCAACTTAACTCAATGATTAATTAA Protein sequence : MNYRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSELTLFTRQLATLSAAALPLEE SLAVIGQQSSNNRLADVLNQVRSAILEGHPLSDALQHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKL IQSLIYPCMLTTVAIVVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKRGN NRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQRLANAAENVRQGNSIHLSLEQ TAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 5e-57 | 44 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-56 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofF | YP_542750.1 | general secretion pathway protein F | VFG2049 | Protein | 2e-53 | 42 |
| hofF | YP_542750.1 | general secretion pathway protein F | VFG0181 | Protein | 5e-61 | 41 |
