Gene Information

Name : ssb (LSL_0008)
Accession : YP_534914.1
Strain : Lactobacillus salivarius UCC118
Genome accession: NC_007929
Putative virulence/resistance : Unknown
Product : single-strand DNA binding protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0629
EC number : -
Position : 9548 - 10099 bp
Length : 552 bp
Strand : +
Note : COG0629 [L] Single-stranded DNA-binding protein

DNA sequence : 
GTGATTAATAGAGCTATTCTAGTAGGTCGTTTAACAAGAGATCCTGATTTACGTTACACGGCTTCTGGAGCTGCGGTTGC
TACATTTACTGTTGCTGTAAATCGTCAATTTACTAACCAACAAGGTGAACGTGAAGCTGATTTCATTAACTGTGTAATGT
GGCGTAAACCAGCAGAAAATTTTGCCAACTTTACTCATAAGGGTTCATTGGTTGGGATTGACGGACGAATTCAAACTCGT
TCTTATGAAAACCAGCAAGGAACAAGAGTATATGTTACAGAAGTTGTAGCCGAGAATTTCTCATTGTTGGAATCACGTGC
CGAAGCAGATCGTTATCGTGAACAACATGGAATGACACAAAATAATTACGGAAATAATGCTCCTTCGCAAAATCAAGCAT
CACAGTTTGATAGCAATCCATTCGGTGATTCTCAATCAAATAATAGTTTTGGTGGAAATACACCAGCAAATAATGGAGCA
GATAATAGTGCTGATCCATTTGCTGATAATGGACAATCTATTGATATTTCTGATGATGACTTGCCATTCTAG

Protein sequence : 
MINRAILVGRLTRDPDLRYTASGAAVATFTVAVNRQFTNQQGEREADFINCVMWRKPAENFANFTHKGSLVGIDGRIQTR
SYENQQGTRVYVTEVVAENFSLLESRAEADRYREQHGMTQNNYGNNAPSQNQASQFDSNPFGDSQSNNSFGGNTPANNGA
DNSADPFADNGQSIDISDDDLPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SEQ_0802 YP_002746140.1 single-strand binding protein Not tested ¥ÕSeq2 Protein 2e-36 61
SAOV_1081 YP_005736576.1 ssDNA-binding protein Not tested ¥ÕSa2 Protein 1e-30 52
ssb-2 NP_814280.1 single-strand binding protein Not tested Not named Protein 3e-38 49
ef0020 AAM75226.1 EF0020 Not tested Not named Protein 2e-38 49
MW1921 NP_646738.1 single-strand DNA-binding protein Not tested ¥ÕSa3 Protein 1e-31 45
SA1792 NP_375091.1 single-strand DNA-binding protein Not tested ¥ÕSa3 Protein 2e-32 45
SAV1983 NP_372507.1 single-strand DNA-binding protein Not tested ¥ÕSa3 Protein 2e-32 45
SAKOR_01963 YP_008492151.1 Single-strand DNA binding protein Not tested ¥ÕSa3 Protein 1e-32 45
SAUSA300_1958 YP_494609.1 single-strand binding protein Not tested ¥ÕSa3 Protein 3e-32 44
SAUSA300_1958 YP_494609.1 single-strand binding protein Not tested ¥ÕSa3 Protein 3e-32 44