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Name : clpC (LSL_0196) Accession : YP_535094.1 Strain : Lactobacillus salivarius UCC118 Genome accession: NC_007929 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 232289 - 234781 bp Length : 2493 bp Strand : + Note : COG0542 [O] ATPases with chaperone activity, ATP-binding subunit DNA sequence : ATGGCTATGGAAGAAAGGTATACACCGAGTGCTAAACAAGTATTAGTTCTTGCACAACAACAAGCTAATTACTTCAAGCA TCAAGCAATAGGAACAGAACATTTGCTTTTAGCACTAACAATGGAGAAAAATGGCGTAGCTGCTAAAGTATTACAAAGTT TTGTAGTAACTGAAGTAGATGTGCGAGAAGAAATTGAACATATCGTAGGATACGGTAATTTACAACGTAGAGGCGCTGAT ACTTATTTACCATATTCCCCAAGAACTCGTTATGTATTAGAGCGTGCTAGAGAACATGCTAAACTTTTTAATGTTGAAAA GGTAGGAACAGAACATATTTTGTTAGCACTATTAGAAGATGATAAAACTATTTCTTCACGTATTCTAGCAGCTCTGAATA TTGATTTACGTAAGGTGAAAAATATTACCTATCGTACAATGGGTGTAGATGCAACAACAGCTAATAGAACACGTAAGAAA TTAGCGTTATCAGAAAAGAAACAGGATAATGGTACACCTACGTTAGATGAATTAGCGCGTGATTTGACAGAAATGGTGCG TAAAGATCAAATTGATCCAGTAGTTGGTAGAGATAATGAAATTAAGCGTGTTGTTCAAATTTTAAGTAGAAGGACAAAGA ATAATCCAGTTCTTTTGGGAGAACCAGGTGTAGGTAAAACAGCTGTTGCAGAAGGATTTTCACAAAAGATTGTAAATGGT GAAGTTCCTGATAATTTAAAGAATAAGCGTGTAATGATGCTTGATATGGGATCTTTGGTTGCTGGAACAAAATATCGTGG TGAATTTGAAGATCGATTAAAGAAGATTATTGAAGAAATTCGTGAAGATGGCAATGTTATTTTATTCATTGATGAAATGC ATACTCTAATAGGTGCGGGTGGTGCTGAAGGCGCGATAGATGCTTCCAATATTTTAAAACCAGCATTAGCGCGTGGTGAA GTACAAGTAATAGGTGCAACAACTTTAAATGAATATCAAAAATATGTTGAAGCTGATGCAGCTTTGGAAAGACGCTTTGC TAGTGTGACAATTAATGAACCCACTCCAGAAGTAGCGTTGACAATTCTAAAAGGATTACGTCCTAAATATGAAAAACACC ATCAACTTCAAATTACAGATGAGGCATTAGAGAGTGCAGTTAAGTTAAGTAAAAGATATATTGCTTCAAGATTTTTACCT GACAAGGCAATTGATTTAATGGATGAGGCTGCTGCTAGAGTAAGAATTAATAATGCACAAAAAGTGGACAAAGTTTCTGC AATAAAGAAGAAATTATCAGAGCTTTCCCAAGAGAAGACAGAAGCGTTGTTAAAAGAAGATTTTGAAAAAGCTGCAGAAA TCAGAAATGAAGAATTAAAGATTCAAGAAAAGCTTGAAAAGCAAATCCAACGTGACAAAGATGAAGAGGATAGCAATAAC TATCGTGTAAAAGTTACGGCTGAAGATATTGCAGAAGTTGTTTCTGAATGGACTGGTGTTCCAGTAACTCAAATTAATCG TTCTGAAGGAGACCGACTAATTAGATTAGAAAAGATATTGCATAATCGAGTTATAGGACAAGATGAAGCTGTTAAAGCAG TAAGTAAAGCGATAAGAAGAGCAAGAAGTGGTTTGAAGGATCCTACAAGACCAATTGGCTCATTTATGTTCTTAGGTCCT ACAGGTGTAGGTAAAACTGAATTAGCTAAAGCTTTAGCAGAAGCTATGTTTGGCTCAGAGGATTCAATGATTAGAATTGA TATGAGTGAATATATGGAGAAATACACAACTAGTCGTTTAATTGGATCTCCTCCTGGATACGTAGGATATGATGAAGGCG GACAATTAACTGAAAAGGTTAGAAATAATCCTTATTCAGTAGTATTATTAGATGAAGTTGAAAAAGCTCATAATGATGTT TTCAATATCTTGTTACAAGTATTAGATGATGGATTTTTAACTGATTCTAAAGGTAGAAAGGTAGACTTCAGAAATACAAT TATCATTATGACATCTAACTTAGGTGCTACAGCCTTACGCGATGAAAAATCAGTAGGTTTTGGTGCAAAAGATGTCAGCG ATGATTATGAAGCAATGGCAGCAAAAGTTAGAGAAACATTGAAGAAGACTTTTAGACCAGAGTTCTTGAATCGTCTTGAC GAAATTGTTGTATTCCATTCGCTTAATAAAGAAGAAATTCATCAAATTGTTAAATTGATGGCTAAGAATATTATAGATAG GATTAAAGAACAAAATATTAATCTGAAAATTACCCCTGCAGCAATAGATATAGTTGCAGAAGCTGGATTTGATGCTGAAT ATGGTGCTCGTCCTATTAGACGTATCCTTCAAGATAAGATAGAGGACTTACTAAGTGAAGAATTATTAGCAGGTAATATC GAAACTGGAGCAACAGTAACAATAGGTGCTAAAAAAGGTGAAATAACGATAAAAGTTAAGAATCCAGTAGCTGCAGAAAA AATAAATAGTTAA Protein sequence : MAMEERYTPSAKQVLVLAQQQANYFKHQAIGTEHLLLALTMEKNGVAAKVLQSFVVTEVDVREEIEHIVGYGNLQRRGAD TYLPYSPRTRYVLERAREHAKLFNVEKVGTEHILLALLEDDKTISSRILAALNIDLRKVKNITYRTMGVDATTANRTRKK LALSEKKQDNGTPTLDELARDLTEMVRKDQIDPVVGRDNEIKRVVQILSRRTKNNPVLLGEPGVGKTAVAEGFSQKIVNG EVPDNLKNKRVMMLDMGSLVAGTKYRGEFEDRLKKIIEEIREDGNVILFIDEMHTLIGAGGAEGAIDASNILKPALARGE VQVIGATTLNEYQKYVEADAALERRFASVTINEPTPEVALTILKGLRPKYEKHHQLQITDEALESAVKLSKRYIASRFLP DKAIDLMDEAAARVRINNAQKVDKVSAIKKKLSELSQEKTEALLKEDFEKAAEIRNEELKIQEKLEKQIQRDKDEEDSNN YRVKVTAEDIAEVVSEWTGVPVTQINRSEGDRLIRLEKILHNRVIGQDEAVKAVSKAIRRARSGLKDPTRPIGSFMFLGP TGVGKTELAKALAEAMFGSEDSMIRIDMSEYMEKYTTSRLIGSPPGYVGYDEGGQLTEKVRNNPYSVVLLDEVEKAHNDV FNILLQVLDDGFLTDSKGRKVDFRNTIIIMTSNLGATALRDEKSVGFGAKDVSDDYEAMAAKVRETLKKTFRPEFLNRLD EIVVFHSLNKEEIHQIVKLMAKNIIDRIKEQNINLKITPAAIDIVAEAGFDAEYGARPIRRILQDKIEDLLSEELLAGNI ETGATVTIGAKKGEITIKVKNPVAAEKINS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_535094.1 | negative regulator of genetic competence | VFG0079 | Protein | 0.0 | 57 |
| clpC | YP_535094.1 | negative regulator of genetic competence | VFG0080 | Protein | 2e-158 | 49 |
