Gene Information

Name : LSL_1375 (LSL_1375)
Accession : YP_536263.1
Strain : Lactobacillus salivarius UCC118
Genome accession: NC_007929
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1445521 - 1446195 bp
Length : 675 bp
Strand : +
Note : COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGTCTGTTATTGAATTAAAAAATATTAATAAGTATTTCGGTAAAGATACTGCTCAGGTACATGTCCTGCGTGATTTAAA
TTTTACTGCAGAAAAAGGAAAGCTCATTTTAATTTTAGGTCCATCTGGTTCTGGCAAAAGCACCTTTTTAACGATTGCTG
GTGGGCTTCAATCTGCAGATTCTGGACGAGTAATGATTAATGATAAAGATATTAGTGCTTTTTCTGCTAAAGAACGTGAC
AATTTACGACTTAATCAAATTGGCTTTATTTTGCAAGCTTATAACTTAGTCCCTTACTTAACTGTCGCTGAACAATTTAC
TTTAGTTGATAAGATTAAAAAAATAAACAATCTTTCTAAAGAGGCATTGAATCAATTGTTGATTAAACTAGGTATCGATA
ATTTGATTAATAAATATCCAGATCAACTATCTGGTGGTCAAAAACAAAGAGTAGCTATTGCTCGAGCCTTATATACCAAC
CCTGAAATTATCTTAGCTGATGAACCAACAGCTGCTTTAGATAGTGCAAAAGTTAAAGAAGTTGGTAGTTTGCTGGCCAA
TCTAGCCCATGACCAGAATAAAGCAATTCTTGTTGTTACACATGATGTTAGATTAGAAAAATTTGCTGATGAAATTTATC
AATTAGATGATGGAAATTTAATAAGATCCAAATGA

Protein sequence : 
MSVIELKNINKYFGKDTAQVHVLRDLNFTAEKGKLILILGPSGSGKSTFLTIAGGLQSADSGRVMINDKDISAFSAKERD
NLRLNQIGFILQAYNLVPYLTVAEQFTLVDKIKKINNLSKEALNQLLIKLGIDNLINKYPDQLSGGQKQRVAIARALYTN
PEIILADEPTAALDSAKVKEVGSLLANLAHDQNKAILVVTHDVRLEKFADEIYQLDDGNLIRSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 7e-44 47
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 6e-45 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LSL_1375 YP_536263.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-33 42
LSL_1375 YP_536263.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 7e-34 41