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Name : LSL_1259 (LSL_1259) Accession : YP_536149.1 Strain : Lactobacillus salivarius UCC118 Genome accession: NC_007929 Putative virulence/resistance : Unknown Product : transcription accessory protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 1288327 - 1290498 bp Length : 2172 bp Strand : - Note : COG2183 [K] Transcriptional accessory protein; contains S1 RNA binding domain DNA sequence : ATGGATAAAAAAGTTTTAAAATTAACTAATGCTGAATTAAAGTATAATCCTAAAAAAATAGAAAAAGTAATTGAATTGCT AGAAGAAGGAAATACTATTCCTTTTATAGCTAGATATAGAAAAGAACTAACTGGAAGTTTAGATGAAGTCCAATTAAGAG AAATCCAAGTAACTTATCAAAGAAATGAAAAGATAGAAACACGTAAGAGTGAAGTTCTTAAGAAAATTTCAGAACAGAAT AAACTTACAGAAGATATAAGAAATAAAATAAATAATGCAAGTACTCTTCAAGAGGTCGAAGATATTTATTTACCTTATAA GAAGAAAAGAAAAACTAAAGCACAAAAAGCAGTTGCAAATGGATTAGAACCATTAGCTAAGTGGTTATTGAGAGTAAATA GCGATGCGCCAATGGTAGAAGCTAAGAAGTATCTTAATAAAGAAGTACCTGATGAAGAAGTTGCCTTAAATGGTGCTGTT GATATTTTAGCAGAAGCATTTGGTGAAGAAGCACAATTAAGAGATTGGGTGCGAAAGCAAATGTCTAGAAAAGGAGTATT AATTGCTAAGGAAAAAGATAGTGAGAAAGATGAAAATGGCACCTATGAAGATTACTATGATTTTGAACAAGTAGTGTCTA AATTAACATCATATCGAATTCTAGCAATTAATCGCGGTGAAAAAGAAGGAATTTTACGAGTAAAAATAAATACAGATGAC GATTATGCGCTAAGATATTTACATTCTAGAATAATTGGTAGTAAGAAAAGTACAAGTAATGACTATGTAGAAAGGGCATA TACTGAAGCGTATAAAAAATTTATCAAACCTGCCATTGAAAGAGAGCTTCGAGCAACTTTAACTGAAAAAGCCGAAAATG AGGCTATTAAAGTTTTTGGTGAAAATTTGTATAATTTATTAATGCAAGCCCCTTTGAAAAATAAAATTATTTTAGGAATG GATCCAGCATTTAGAACTGGTTGTAAGTTGGCGATTATTGACGAGACTGGAAAATTTTTAGTTAAAGATGTGATTTATCC ACATGAAAAGCATAAAGGCGAGAAACCAAATTCTGAATTAAGAAAAGAAGCTGCTGAAAAATTAGAGACATTGATAAATA GATATAATGTTGACATGATAGCAATTGGGAATGGTACAGCAAGTCGAGAATCAGAAAAATTTGTAGCAGAAGTTTTAAAG AAGATAGATAAAGAAGTATATTACGTAATTGTAAATGAATCAGGAGCTTCTGTATATTCAGCAAGTGAAGTAGCAAGAGA TGAATTCCCAGATTTTAACGTAGAAGAACGTTCGGCCGTAAGTATAGCTCGAAGATTGCAAGATCCTTTAGCAGAATTAA TAAAGATTAATCCTGAATCAATTGGTGTGGGACAATACCAGCATGATTTACCACAAAAACAATTAGATAGTGAAGTTGAA GCGACTGTTGAAACTGCAGTTAATAAAGTTGGTGTGAATTTGAATACAGCTAGTATCCAATTACTAACCTATATTTCTGG ATTGAATAAAACAACAGCTCAAAATATTATTCTTTATCGTGAAGAAAACGGAAAATTTCAAAATCGAAAAGAGTTAAAAA AGGTTCCTAGATTAGGTCCTAAAGCTTATGAGCAGGCGGCAGGCTTTTTAAGGATTATTGATGGGAATGAGTCTCTAGAT AATACAGATATACATCCAGAAAGTTACCCGCTAGCAGAAAAATTGATAAAGGATCTAGGCATTACTAAAGAAGATATGGG TACTAACACTATAAACGATAAATTAGCAAAATTTAATGTTGAAAGATATGCACTAGATAATGAATTAGAAGTAATAACTG TTAAAGATATTGTAAAAAGTTTGATGAAACCAGGGCGCGATGGTCGAGAAAGTATGCCAATGCCTTTATTGAAATCAGAT ATTTTAAAAATAGAAGATTTAAAAGCAGGGATGCAACTAGAGGGTACGGTAAGAAATGTTGTTGATTTTGGAGCATTTGT TGATATTGGTGTAAAACAAGATGGACTAGTGCATTTATCAAAACTAAGTAAGAAATATGTTTCTAATCCACGAGATGTAG TTGCTGTAGGACAGATAGTTACTGTTTGGGTTGAAGATGTTGATTTAAATAGAAAGAGAATTCAATTAACAATGGTAAAT CCAAATGAATAA Protein sequence : MDKKVLKLTNAELKYNPKKIEKVIELLEEGNTIPFIARYRKELTGSLDEVQLREIQVTYQRNEKIETRKSEVLKKISEQN KLTEDIRNKINNASTLQEVEDIYLPYKKKRKTKAQKAVANGLEPLAKWLLRVNSDAPMVEAKKYLNKEVPDEEVALNGAV DILAEAFGEEAQLRDWVRKQMSRKGVLIAKEKDSEKDENGTYEDYYDFEQVVSKLTSYRILAINRGEKEGILRVKINTDD DYALRYLHSRIIGSKKSTSNDYVERAYTEAYKKFIKPAIERELRATLTEKAENEAIKVFGENLYNLLMQAPLKNKIILGM DPAFRTGCKLAIIDETGKFLVKDVIYPHEKHKGEKPNSELRKEAAEKLETLINRYNVDMIAIGNGTASRESEKFVAEVLK KIDKEVYYVIVNESGASVYSASEVARDEFPDFNVEERSAVSIARRLQDPLAELIKINPESIGVGQYQHDLPQKQLDSEVE ATVETAVNKVGVNLNTASIQLLTYISGLNKTTAQNIILYREENGKFQNRKELKKVPRLGPKAYEQAAGFLRIIDGNESLD NTDIHPESYPLAEKLIKDLGITKEDMGTNTINDKLAKFNVERYALDNELEVITVKDIVKSLMKPGRDGRESMPMPLLKSD ILKIEDLKAGMQLEGTVRNVVDFGAFVDIGVKQDGLVHLSKLSKKYVSNPRDVVAVGQIVTVWVEDVDLNRKRIQLTMVN PNE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 2e-130 | 45 |
