Gene Information

Name : RPC_0628 (RPC_0628)
Accession : YP_530520.1
Strain : Rhodopseudomonas palustris BisB18
Genome accession: NC_007925
Putative virulence/resistance : Unknown
Product : phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 677004 - 678221 bp
Length : 1218 bp
Strand : +
Note : -

DNA sequence :
ATGCCGGTCAAGAACGACACCTATTTTCGGCACCTGAAGCCGGCCGAAAAGGATTACAAGCGATCCGATAGTGGCGGTCT
CTTCATGCTCGTCACGAAGACCGGATCAAAGCTCTGGCGCTATGGCTACAACTTTGACGCCAAGCAGAAGCTGCTCGCGC
TGGGCCAGTATCCACTTATCTCACTCGCGGATGCCCGCACCAAGCGCGACGATGCCAAGAGGTTGTTGGCAGAGGGCATC
GATCCCTCCGTTGAGCGCAAGGCGGAACGCCGAGATGCGCGCATCGCGCGAAGCCATACATTTGAGGCCGTGGCCAAAGA
ACTCATGGACAAGTTCGAGGCCGAAGGTGATGCGCCAACGACCCTGAAGAAAAAGCAATGGCTGCTGGATTTTGCCAACA
AGGAGTTTGGCAAGCGGCCGATCGCCGAAATCAAGGCGCCTGAAATCCTAGACGCGCTGAGAAAGATCGAGAAGCGCGGA
AGACATGAGACCGCGACCCGCGTGCGAAGCACCGTTGGCGCTGTGTTCCGCTATGGCATTGCGACCGGACGAGCCGAACA
AGATCCGGCCGCGGACCTGCGCGGCGCTCTGATCACCCCGACTGTCACTCACCGCGCAACAATCGTCGAGCCTGACGCCG
TGGGTGCCTTGCTCCGCGCCATTGATGGCTTTGAGGGAAACGCCGCGATACGATATGCGCTGAGGCTCGCCCCACTCTTC
TTCGTCCGACCTGGAGAACTCCGAAAGGCAGAATGGGCGGAGTTCAAGCTTGAAAACGCCGAATGGCGCATCCCCGCCGC
GAAGATGAAAATGAGGCGCCCGCATCGGGTGCCTCTCGCCCATCAGGCACTGTCCATCCTGCGCGAGCTCCAGGGTATCA
CCGGCGGATCGAAATATCTCTTTCCCTCGGTGCGATCCTGGCATCGTCCGATCAGTGACAACACGCTCAACGCCGTATTG
CGCCGTCTCGGCTATGACAAGACTGAGCTGACTGTCCATGGGTTACGATCGACTGCATCAGTGCTGTTGAACGAAAGCGG
CAAATGGCATGCCGACGCCATTGAACGTCAGCTTGCACATCAAGAGCAGAATGAGGTCCGCGGCGCCTATATTCATGCCG
CCGAATTCTGGGACGAACGGGTGCGGATGATGTGCTGGTGGGCCGATGAACTGGATCGACTGCGAGACCATGGGCGGGTC
GTTAAGATCCGCGCGTGA

Protein sequence :
MPVKNDTYFRHLKPAEKDYKRSDSGGLFMLVTKTGSKLWRYGYNFDAKQKLLALGQYPLISLADARTKRDDAKRLLAEGI
DPSVERKAERRDARIARSHTFEAVAKELMDKFEAEGDAPTTLKKKQWLLDFANKEFGKRPIAEIKAPEILDALRKIEKRG
RHETATRVRSTVGAVFRYGIATGRAEQDPAADLRGALITPTVTHRATIVEPDAVGALLRAIDGFEGNAAIRYALRLAPLF
FVRPGELRKAEWAEFKLENAEWRIPAAKMKMRRPHRVPLAHQALSILRELQGITGGSKYLFPSVRSWHRPISDNTLNAVL
RRLGYDKTELTVHGLRSTASVLLNESGKWHADAIERQLAHQEQNEVRGAYIHAAEFWDERVRMMCWWADELDRLRDHGRV
VKIRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-61 41
int CAC39282.1 integrase Not tested LPA Protein 1e-62 41
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-62 41
ECs4534 NP_312561.1 integrase Not tested LEE Protein 6e-62 41
int AAC31482.1 CP4-like integrase Not tested LEE Protein 4e-62 41
int ACU09430.1 integrase Not tested LEE Protein 4e-62 41
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 6e-62 41
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-62 41
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-62 41
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-62 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPC_0628 YP_530520.1 phage integrase VFG0783 Protein 3e-62 41
RPC_0628 YP_530520.1 phage integrase VFG0598 Protein 9e-63 41