Name : RPC_0628 (RPC_0628) Accession : YP_530520.1 Strain : Rhodopseudomonas palustris BisB18 Genome accession: NC_007925 Putative virulence/resistance : Unknown Product : phage integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 677004 - 678221 bp Length : 1218 bp Strand : + Note : - DNA sequence : ATGCCGGTCAAGAACGACACCTATTTTCGGCACCTGAAGCCGGCCGAAAAGGATTACAAGCGATCCGATAGTGGCGGTCT CTTCATGCTCGTCACGAAGACCGGATCAAAGCTCTGGCGCTATGGCTACAACTTTGACGCCAAGCAGAAGCTGCTCGCGC TGGGCCAGTATCCACTTATCTCACTCGCGGATGCCCGCACCAAGCGCGACGATGCCAAGAGGTTGTTGGCAGAGGGCATC GATCCCTCCGTTGAGCGCAAGGCGGAACGCCGAGATGCGCGCATCGCGCGAAGCCATACATTTGAGGCCGTGGCCAAAGA ACTCATGGACAAGTTCGAGGCCGAAGGTGATGCGCCAACGACCCTGAAGAAAAAGCAATGGCTGCTGGATTTTGCCAACA AGGAGTTTGGCAAGCGGCCGATCGCCGAAATCAAGGCGCCTGAAATCCTAGACGCGCTGAGAAAGATCGAGAAGCGCGGA AGACATGAGACCGCGACCCGCGTGCGAAGCACCGTTGGCGCTGTGTTCCGCTATGGCATTGCGACCGGACGAGCCGAACA AGATCCGGCCGCGGACCTGCGCGGCGCTCTGATCACCCCGACTGTCACTCACCGCGCAACAATCGTCGAGCCTGACGCCG TGGGTGCCTTGCTCCGCGCCATTGATGGCTTTGAGGGAAACGCCGCGATACGATATGCGCTGAGGCTCGCCCCACTCTTC TTCGTCCGACCTGGAGAACTCCGAAAGGCAGAATGGGCGGAGTTCAAGCTTGAAAACGCCGAATGGCGCATCCCCGCCGC GAAGATGAAAATGAGGCGCCCGCATCGGGTGCCTCTCGCCCATCAGGCACTGTCCATCCTGCGCGAGCTCCAGGGTATCA CCGGCGGATCGAAATATCTCTTTCCCTCGGTGCGATCCTGGCATCGTCCGATCAGTGACAACACGCTCAACGCCGTATTG CGCCGTCTCGGCTATGACAAGACTGAGCTGACTGTCCATGGGTTACGATCGACTGCATCAGTGCTGTTGAACGAAAGCGG CAAATGGCATGCCGACGCCATTGAACGTCAGCTTGCACATCAAGAGCAGAATGAGGTCCGCGGCGCCTATATTCATGCCG CCGAATTCTGGGACGAACGGGTGCGGATGATGTGCTGGTGGGCCGATGAACTGGATCGACTGCGAGACCATGGGCGGGTC GTTAAGATCCGCGCGTGA Protein sequence : MPVKNDTYFRHLKPAEKDYKRSDSGGLFMLVTKTGSKLWRYGYNFDAKQKLLALGQYPLISLADARTKRDDAKRLLAEGI DPSVERKAERRDARIARSHTFEAVAKELMDKFEAEGDAPTTLKKKQWLLDFANKEFGKRPIAEIKAPEILDALRKIEKRG RHETATRVRSTVGAVFRYGIATGRAEQDPAADLRGALITPTVTHRATIVEPDAVGALLRAIDGFEGNAAIRYALRLAPLF FVRPGELRKAEWAEFKLENAEWRIPAAKMKMRRPHRVPLAHQALSILRELQGITGGSKYLFPSVRSWHRPISDNTLNAVL RRLGYDKTELTVHGLRSTASVLLNESGKWHADAIERQLAHQEQNEVRGAYIHAAEFWDERVRMMCWWADELDRLRDHGRV VKIRA |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 2e-61 | 41 |
int | CAC39282.1 | integrase | Not tested | LPA | Protein | 1e-62 | 41 |
aec33 | AAW51716.1 | Int | Not tested | AGI-3 | Protein | 1e-62 | 41 |
ECs4534 | NP_312561.1 | integrase | Not tested | LEE | Protein | 6e-62 | 41 |
int | AAC31482.1 | CP4-like integrase | Not tested | LEE | Protein | 4e-62 | 41 |
int | ACU09430.1 | integrase | Not tested | LEE | Protein | 4e-62 | 41 |
intL | NP_290239.1 | integrase for prophage 933L and the LEE pathogenicity island | Not tested | LEE | Protein | 6e-62 | 41 |
S4835 | NP_839238.1 | integrase | Not tested | SHI-2 | Protein | 2e-62 | 41 |
SF3698 | NP_709437.1 | integrase | Not tested | SHI-2 | Protein | 2e-62 | 41 |
int | AAD54663.1 | Sai integrase | Not tested | SHI-2 | Protein | 2e-62 | 41 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
RPC_0628 | YP_530520.1 | phage integrase | VFG0783 | Protein | 3e-62 | 41 |
RPC_0628 | YP_530520.1 | phage integrase | VFG0598 | Protein | 9e-63 | 41 |