Gene Information

Name : RPC_3398 (RPC_3398)
Accession : YP_533257.1
Strain : Rhodopseudomonas palustris BisB18
Genome accession: NC_007925
Putative virulence/resistance : Resistance
Product : Beta-lactamase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2602
EC number : 3.5.2.6
Position : 3782428 - 3783246 bp
Length : 819 bp
Strand : -
Note : -

DNA sequence :
TTGCTCAATCGTCGTCATGCCATCGGCCTGTTCGCGGCCACCGCCGTCGCTCCGTTGTCGGCGCGCGCCGAAGTCGCGCC
GCCGCGCAGCGAGATCCGCGTCGCGCTGGCCAAGCGTTTCGCCGATGTCGGCACCGCGGGCACCTTCGTCGGCTACAAGA
CCGAGGACTATCTGATCATCGCCAGCGATCCCGATCGTTCCGGGCAGGGCTTCCACCCGGCATCGACCTTCAAAATCGCC
CATTCGCTGATCGCGTTGGAGACCGGCGTGGTCGCCGATCCCGACAAGGACGTGTTCAAGTGGGACGGCGTGACGCGCGA
CATCGAAGGATGGAATCGCGATCACACGCTGCGCTCGGCGATCGCCGCCTCCGCGGTGCCGGTGTATCAGGAGATCGCGC
GTCGGATCGGCGCGGAGCGGATGCAGAAGCATCTCGATCTGTTCGACTACGGCAACCGCAACATCGGCGGCGGCATCGAT
CAGTTCTGGCTCACCGGCGAGCTGCGGATCGATCCGATCCAGCAGATCGATTTCGTCGACCGGCTGCGGCGCGGCGTCTT
GCCGATCTCGGCGCGCAGCCAGGATCTGGTCCGCGACATCCTGCCGGTCGGCAAGGTCGGCGATGCGCTGATTCGCGCCA
AGACCGGGCTGCTCGGCGCCGAAATCGGCAAACCGACGCTGGGCTGGCTGGTCGGCTGGGCCGAGAAGGGCGGCGCGCAC
ACCGTGTTCGCGCTCAATCTCGACATTCGCGAGCCGCGCCACGTCGCTCTGCGCATGGCGCTGGCCGAGCAATGCCTCGG
CGATATCGGCGCGATCTGA

Protein sequence :
MLNRRHAIGLFAATAVAPLSARAEVAPPRSEIRVALAKRFADVGTAGTFVGYKTEDYLIIASDPDRSGQGFHPASTFKIA
HSLIALETGVVADPDKDVFKWDGVTRDIEGWNRDHTLRSAIAASAVPVYQEIARRIGAERMQKHLDLFDYGNRNIGGGID
QFWLTGELRIDPIQQIDFVDRLRRGVLPISARSQDLVRDILPVGKVGDALIRAKTGLLGAEIGKPTLGWLVGWAEKGGAH
TVFALNLDIREPRHVALRMALAEQCLGDIGAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
blaOXA-129 AET25386.1 OXA-129 beta-lactamase Not tested PAGI-2(C) Protein 8e-47 42
bla OXA-129 AFG30109.1 OXA-129 beta-lactamase Not tested PAGI-2 Protein 8e-47 42
bla OXA-10 CAJ77047.1 Oxacillinase Not tested AbaR1 Protein 6e-46 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPC_3398 YP_533257.1 Beta-lactamase JN205800.1.gene6.p01 Protein 2e-44 42
RPC_3398 YP_533257.1 Beta-lactamase HM015773.1.gene6.p01 Protein 3e-44 42
RPC_3398 YP_533257.1 Beta-lactamase X75562.1.gene1.p01 Protein 4e-46 42
RPC_3398 YP_533257.1 Beta-lactamase AM932669.1.gene2.p01 Protein 5e-47 42
RPC_3398 YP_533257.1 Beta-lactamase AY343493.1.gene1.p01 Protein 3e-41 42
RPC_3398 YP_533257.1 Beta-lactamase HQ700343.1.gene1.p01 Protein 2e-43 41
RPC_3398 YP_533257.1 Beta-lactamase AY500137.1.gene1.p01 Protein 4e-44 41
RPC_3398 YP_533257.1 Beta-lactamase AM412777.1.gene1.p01 Protein 2e-46 41
RPC_3398 YP_533257.1 Beta-lactamase AJ854182.1.gene1.p01 Protein 1e-45 41
RPC_3398 YP_533257.1 Beta-lactamase U37105.2.gene2.p01 Protein 4e-46 41
RPC_3398 YP_533257.1 Beta-lactamase AY445080.1.gene1.p01 Protein 1e-46 41
RPC_3398 YP_533257.1 Beta-lactamase Z22590.1.gene1.p01 Protein 1e-45 41
RPC_3398 YP_533257.1 Beta-lactamase NC_010410.6002874.p0 Protein 4e-46 41
RPC_3398 YP_533257.1 Beta-lactamase X58272.1.gene1.p01 Protein 2e-46 41
RPC_3398 YP_533257.1 Beta-lactamase EF102240.1.gene13.p0 Protein 2e-41 41
RPC_3398 YP_533257.1 Beta-lactamase NC_010481.6155789.p0 Protein 1e-41 41
RPC_3398 YP_533257.1 Beta-lactamase AY665723.gene.p01 Protein 1e-41 41
RPC_3398 YP_533257.1 Beta-lactamase GU831575.1.gene1.p01 Protein 1e-41 41
RPC_3398 YP_533257.1 Beta-lactamase AY423074.1.gene1.p01 Protein 5e-34 41