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Name : RPC_3009 (RPC_3009) Accession : YP_532873.1 Strain : Rhodopseudomonas palustris BisB18 Genome accession: NC_007925 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3303625 - 3305310 bp Length : 1686 bp Strand : - Note : - DNA sequence : ATGGATCGGACTGCCCAGGATTTTGTCGCGCATTTTTGCCGCGAGAATGCTCTAGCGGCGGAATTCGCCGGCCGCGGTGC TGTTGCCGCCGGGGCGGCCGACGCCGACCGCGGCCTGCGTAAACTCTGGGAGATCAGCGAATTGTCGGCGAGTGAGTTCG CCGACGCGGTGGCACGGTTTTACGACCTGCCGCGAACTACGCTTCCGGAGCTGATTGCAGCGCAGTCGCAGGCGCATCGG TTCTCCCGCCGTTTCTTGCGGGAGATGGCGGTGTTTCCTTATCAGTCAGCGACCGGTGAGCCGATCGTCGCGATTGCCGA TCCGAGCGACCACGCGTCGATACGGGCGGCGGCGATCGTGTTCGGCGCCGCCGTCAGCACCCAGGTCGCTTCGTTTGAGG ACATCGCGACGGTGCTCGATCAGCGTCTCGGCGAGGATCACAACTCCGAGGACGAAAGCGTCGCGAGCATCTCGTCGCAG GACGACGACATCGACAATCTGCGCGATCTGGCCAGCGGCGCGCCGGTGGTCCGCGCGGTCAACGATCTGTTCGAAAGCGC GGTCGAACTGCGGGCCAGCGACATTCATATCGAGCCGACGCGCACCGCGCTGATCGCGCGGATGCGGATCGACGGACTGT TGCGCACCGTGCCGACGCCGGCCGGGGTGCCGCCGCAAGCGGTGATTTCCCGGATCAAGATCTTGGCGGGTCTCAACATC GCGGAACGGCGGCTGCCGCAGGACGGCGCTGCTCGGTTCCGTGCGGCGCGTTCGGAGATCGACATGCGCGTTGCGATCAT GCCGACGCAACACGGCGAGTCCGCGGTCATCCGCTTGCTGCCGAGGGACCGCGGCCTGCTCTCGATCGAGAAGCTCGGCT TCCTGCCGGGCGACGAAGGCAAGCTCCGCGGCATGCTGACGCTGCCACACGGCATGATCGTGGTGACCGGGCCGACCGGG AGCGGCAAGACCACGACGCTTGCCACGGTCCTGTCGGTGCTCAACCAACCGACCCGGAAGATTTTGACGATCGAGGATCC GGTCGAATACGAAATTCCGGGGATATGCCAATCCCAGGCCAAGCCGTCGATCGGTCTGACCTTTGCGACCGCGCTGCGCG CCTTCGTCCGCCAGGACCCCGACGTGATCATGGTCGGAGAGATCCGCGACGCCGAAACCGCGCATGTCGCGATCCACGCG GCGCTGACCGGCCATCTGGTGCTCACCACGCTGCACACCGAAACCGCGGCCGCCGCGGTGCCGCGGCTGCTCGACCTGGG GGTGGAGGCGTTCTTGCTGCGCTCGACGCTACGGGCGGTGATCGCACAACGCCTGGTTCGTCAGTTGTGCGATCGATGCA AGGCCGGCCGTGCTTTGACCGAAGCCGATATCGAGGTCGATCCGCGCTATGCCGCCATTGGGCTCAAACTCGGCGAGACC ATCTTCGAGCCGGTCGGCTGCGAGCGCTGCGGCGGTACCGGGTATCGCGGCCGCTGTGGCGTGTTCGAGATCTTGGAGAT GAGCGAAGACGTCCGCCAGTTGATCGACCAGCAATCCGATTGGGCCTCGATCGACAAGGTCGCGGTTCGCAACGGCATGA CGACGATGATCGATGACGGCCTCGCCAAATGCCGCTGCGGCATGACCTCGGCGGCCGAGATTCTTCGCGTCACCACGGTG CGGTGA Protein sequence : MDRTAQDFVAHFCRENALAAEFAGRGAVAAGAADADRGLRKLWEISELSASEFADAVARFYDLPRTTLPELIAAQSQAHR FSRRFLREMAVFPYQSATGEPIVAIADPSDHASIRAAAIVFGAAVSTQVASFEDIATVLDQRLGEDHNSEDESVASISSQ DDDIDNLRDLASGAPVVRAVNDLFESAVELRASDIHIEPTRTALIARMRIDGLLRTVPTPAGVPPQAVISRIKILAGLNI AERRLPQDGAARFRAARSEIDMRVAIMPTQHGESAVIRLLPRDRGLLSIEKLGFLPGDEGKLRGMLTLPHGMIVVTGPTG SGKTTTLATVLSVLNQPTRKILTIEDPVEYEIPGICQSQAKPSIGLTFATALRAFVRQDPDVIMVGEIRDAETAHVAIHA ALTGHLVLTTLHTETAAAAVPRLLDLGVEAFLLRSTLRAVIAQRLVRQLCDRCKAGRALTEADIEVDPRYAAIGLKLGET IFEPVGCERCGGTGYRGRCGVFEILEMSEDVRQLIDQQSDWASIDKVAVRNGMTTMIDDGLAKCRCGMTSAAEILRVTTV R |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-59 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-59 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RPC_3009 | YP_532873.1 | type II secretion system protein E | VFG1876 | Protein | 1e-67 | 44 |
| RPC_3009 | YP_532873.1 | type II secretion system protein E | VFG2048 | Protein | 1e-58 | 44 |
