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Name : RPC_2280 (RPC_2280) Accession : YP_532153.1 Strain : Rhodopseudomonas palustris BisB18 Genome accession: NC_007925 Putative virulence/resistance : Resistance Product : major facilitator transporter Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 2479300 - 2480559 bp Length : 1260 bp Strand : + Note : - DNA sequence : ATGACTGTCGAACAGCCTGTCGCGGAGGCCATCGCGACGCCTCCCATAGAAGGGCCGCGCCGCGCCGCGGTCGGCTTCAT CTTCATCACTATCCTGCTCGACATGCTGTCGATCGGCATGATCCTGCCGATCCTGCCGAAGCTGGTGGAGAGCTTCGCCG ACAACAACACCGCGGACGCCGCAACAATCTACGGCCTGTTCGGCACCGCCTGGGCGTTGATGCAGTTCTTCGCCTCGCCG GTGCTCGGCGCGCTGAGCGACCGGTTCGGCCGCCGCCCGGTGATCCTGTTGTCGAATTTCGGGCTCGGGCTCGACTACAT CATGATGGCGCTGGCGCCGTCGCTGATCTGGCTGTTCGTCGGCCGGATGATTTCCGGCGTCACCTCGGCGAGCATTTCGA CCTCGTTCGCCTATATCGCCGACGTCACGGCGCCGGAGAAACGCGCCGCGGTGTTCGGCAAGATCGGGGCGGCGTTCGGG CTCGGCTTCATCTTCGGCCCGGCGATCGGCGGACTGCTCGGCGGCGTCGATCCGCGGCTGCCGTTCTGGGTCGCCGCCGG GCTCAGCCTCGCCAACGCGATGTACGGCTACTTCGTATTGCCGGAATCGCTGCCGAAAGAGCGCCGCTCGCCGTTCAAAT GGCGCAGCGCCAACCCGCTCGGCGCGCTGCGGCTGCTGCGCTCCAACGCCACGCTGGCGGCGCTCGCCGTGGTGACGTTC TGCGCCGAGGTGGCGCATGTCGCGCTGCCGGCGACCTTCGTGCTCTACACCACCTATCGTTACGGATGGGACCAGACCAC GGTCGGGCTGGCGCTGGCCTTCGTCGGACTATGCACCACCATCGTGCAGGGCGGGCTGGTCGGGCCGTCGCTGAAGCTGC TCGGCGAGCGCTGGGCGATGATTCTTGGCTATGGCGGCGGCGCGCTCGGCTTTGCGATCTACGCGTTCGCGCCGAACGGG CCGCTGTTCTGGATCGGCATCCCGGTGATGACGATCTGGGGCATCGCCGGACCCGCGACCTCGAGCCTGATGACGCGGCT GGTGCCGGCGGACCAGCAGGGCCAGTTGCAGGGCGCCAACACCAGCGTCAACAGCGTCGCCGAACTGGTCGGCCCGTCGC TGTTCACGCTGATCTTCGCGTTCTTCATCGCCGATGGCACGCCGCTGCATCTGCCCGGCGCGCCGTTCATTGTGGCGGGT GCGCTGTTGCTGGTGTCGATGCTGATCGCAGGCAGCGCGGTGGCGGCGATGAACAGGTAG Protein sequence : MTVEQPVAEAIATPPIEGPRRAAVGFIFITILLDMLSIGMILPILPKLVESFADNNTADAATIYGLFGTAWALMQFFASP VLGALSDRFGRRPVILLSNFGLGLDYIMMALAPSLIWLFVGRMISGVTSASISTSFAYIADVTAPEKRAAVFGKIGAAFG LGFIFGPAIGGLLGGVDPRLPFWVAAGLSLANAMYGYFVLPESLPKERRSPFKWRSANPLGALRLLRSNATLAALAVVTF CAEVAHVALPATFVLYTTYRYGWDQTTVGLALAFVGLCTTIVQGGLVGPSLKLLGERWAMILGYGGGALGFAIYAFAPNG PLFWIGIPVMTIWGIAGPATSSLMTRLVPADQQGQLQGANTSVNSVAELVGPSLFTLIFAFFIADGTPLHLPGAPFIVAG ALLLVSMLIAGSAVAAMNR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 1e-39 | 42 |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 2e-39 | 42 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 1e-39 | 42 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 1e-39 | 42 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 6e-40 | 41 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 9e-40 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RPC_2280 | YP_532153.1 | major facilitator transporter | NC_011586.7045189.p0 | Protein | 2e-36 | 42 |
| RPC_2280 | YP_532153.1 | major facilitator transporter | AF090987.gene.p01 | Protein | 1e-30 | 42 |
| RPC_2280 | YP_532153.1 | major facilitator transporter | X75761.gene.p01 | Protein | 4e-39 | 42 |
| RPC_2280 | YP_532153.1 | major facilitator transporter | AF534183.gene.p01 | Protein | 4e-40 | 41 |
| RPC_2280 | YP_532153.1 | major facilitator transporter | NC_010410.6002597.p0 | Protein | 4e-40 | 41 |
| RPC_2280 | YP_532153.1 | major facilitator transporter | CP001485.1.gene2821. | Protein | 4e-40 | 41 |
