Gene Information

Name : RPC_2068 (RPC_2068)
Accession : YP_531941.1
Strain : Rhodopseudomonas palustris BisB18
Genome accession: NC_007925
Putative virulence/resistance : Resistance
Product : major facilitator transporter
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 2264188 - 2265375 bp
Length : 1188 bp
Strand : -
Note : -

DNA sequence : 
ATGATGAACAGGCCGCTTGTCGTTATTTTTGCCACCATCTGCCTGGACGCCGTCGGCATCGGCCTCGTCTTCCCTGTTCT
GCCGCGGCTTCTTGAGGATGTCACGCACAGCCCGAACATCGCGCCCTATATCGGGATCATGACCGCGCTCTATGCGGTGA
TGCAGTTTGTCTTCGCCCCCGTGCTCGGTGCTTTGAGCGACAACCTCGGCCGGCGTCCCGTGCTGCTGATTTCGCTCGCG
GGAGCGGCCATCAACTACGTCATCATGGCGTTCGCACCGCAGCTTTGGATGCTGATGCTCGGCCGCGCAGTTGCCGGCCT
GACCAGCGCCAATGTCTCCGTGGCAACGGCCTACATCACCGACATTTCATCCGAGGACCAGCGCGCCCGCAGATTCGGCC
TGTCCAACGCCATGTTCGGCATCGGCTTTATCATCGGGCCGGTTCTCGGCGGCCTGCTCGGCGACACCTGGCTGCGGCTG
CCTTTCATCGCCGCCGCCGCGCTGAACGCCGGCAATCTCCTGCTGGCGTTGTTCGTGCTGCCGGAATCCCGCACGGCGGC
CCGTGAGAAGATCGATCTGGTCGCGCTCAACCCGCTTCGGCCGCTGCGTTGGGTGTTCGCCATCAAGGGGCTTTTGCCCG
TCGTGTTTGTGTACTTCATCTTGAGCGCAACCGGGGAGGCCTACGGCGTCTGCTGGGCGTTGTGGGGTTTCGACACGTTT
CAATGGAGCGGCCTGTGGATCGGGCTTTCGCTCGGCGCTTTCGGTATCTGCCAAACGCTGGTGCAGGCCTTGCTGCCCGG
CCCCGCGACCAAACTGCTTGGCGAGCGCATGGCCGTTGTGGTGGGCATCGCCTGCGCCTGTATCGCTCTTGTCGCGCTGG
CCTTCGCCAATCAAGGCTGGATGGTATTCGCCATCATGCCGTTGTTCGCTCTCGCCGGAATCGGCACGCCGGCGTTTCAA
GCCCTGGCCACCCGGCAGGTTGATCCGGACCGTCAAGGTCAATTGCAAGGCGTGCTGGCCTCGGCCGTCAGCCTGGCGTC
GATCGCAGCGCCGCTCGCCTTCTCGACGTTCTACTTTGTCGTTCAAAACGACTGGCCCGGAGCCATCTGGCTCTTGGTGG
TCGTCATTTATGCAATCGCGATTCCGCTGGTTCTTCTCGGCACCCGGACCGCCCGCGCTGCGACGTGA

Protein sequence : 
MMNRPLVVIFATICLDAVGIGLVFPVLPRLLEDVTHSPNIAPYIGIMTALYAVMQFVFAPVLGALSDNLGRRPVLLISLA
GAAINYVIMAFAPQLWMLMLGRAVAGLTSANVSVATAYITDISSEDQRARRFGLSNAMFGIGFIIGPVLGGLLGDTWLRL
PFIAAAALNAGNLLLALFVLPESRTAAREKIDLVALNPLRPLRWVFAIKGLLPVVFVYFILSATGEAYGVCWALWGFDTF
QWSGLWIGLSLGAFGICQTLVQALLPGPATKLLGERMAVVVGIACACIALVALAFANQGWMVFAIMPLFALAGIGTPAFQ
ALATRQVDPDRQGQLQGVLASAVSLASIAAPLAFSTFYFVVQNDWPGAIWLLVVVIYAIAIPLVLLGTRTARAAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 3e-66 51
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 3e-66 51
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 5e-66 51
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 3e-66 51
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 3e-66 51
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 2e-66 51
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 8e-53 45
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 8e-53 45
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 8e-53 45
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 8e-53 45
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 1e-54 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPC_2068 YP_531941.1 major facilitator transporter NC_011595.7059241.p0 Protein 2e-94 61
RPC_2068 YP_531941.1 major facilitator transporter NC_011586.7043399.p0 Protein 1e-93 61
RPC_2068 YP_531941.1 major facilitator transporter NC_010410.6003291.p0 Protein 2e-94 61
RPC_2068 YP_531941.1 major facilitator transporter NC_009085.4918440.p0 Protein 6e-87 60
RPC_2068 YP_531941.1 major facilitator transporter Y19114.gene.p01 Protein 2e-68 51
RPC_2068 YP_531941.1 major facilitator transporter NC_010410.6002597.p0 Protein 2e-66 51
RPC_2068 YP_531941.1 major facilitator transporter CP001485.1.gene2821. Protein 2e-66 51
RPC_2068 YP_531941.1 major facilitator transporter AF534183.gene.p01 Protein 1e-66 51
RPC_2068 YP_531941.1 major facilitator transporter NC_011586.7045189.p0 Protein 3e-59 50
RPC_2068 YP_531941.1 major facilitator transporter X75761.gene.p01 Protein 8e-65 50
RPC_2068 YP_531941.1 major facilitator transporter AF090987.gene.p01 Protein 2e-68 50
RPC_2068 YP_531941.1 major facilitator transporter AY264780.2.gene3.p01 Protein 1e-68 49
RPC_2068 YP_531941.1 major facilitator transporter NC_010410.6002612.p0 Protein 7e-55 44
RPC_2068 YP_531941.1 major facilitator transporter AF133140.gene.p01 Protein 7e-55 44
RPC_2068 YP_531941.1 major facilitator transporter AY743590.gene.p01 Protein 2e-62 44
RPC_2068 YP_531941.1 major facilitator transporter AF133139.gene.p01 Protein 2e-53 43
RPC_2068 YP_531941.1 major facilitator transporter Y19116.gene.p01 Protein 2e-45 41
RPC_2068 YP_531941.1 major facilitator transporter AJ420072.gene.p01 Protein 2e-48 41