Gene Information

Name : fliQ (RPC_1520)
Accession : YP_531401.1
Strain : Rhodopseudomonas palustris BisB18
Genome accession: NC_007925
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliQ
Function : -
COG functional category : N : Cell motility
COG ID : COG1987
EC number : -
Position : 1656402 - 1656665 bp
Length : 264 bp
Strand : +
Note : FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum

DNA sequence : 
ATGACCGGCATGGAAACCCTCGACGTCGCGCGCGACGCGATCTGGACCATCGTCATCGTGTCGTCGCCGCTGATGGTGGT
CGGCCTGGTGGTCGGCGTGGCGGTGTCGCTGGTGCAGGCGCTGACCCAGATCCAGGAACAGACCCTGGTTTTCGTGCCGA
AAATCATCGCCATCTTCGTCACCTTGATCTTGGCGCTGCCGTTCATGGCCGACGCGATGCACAGCCACATGATGCGGATT
TCGTCGCGAATCATGGGAGGCTAG

Protein sequence : 
MTGMETLDVARDAIWTIVIVSSPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKIIAIFVTLILALPFMADAMHSHMMRI
SSRIMGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 0.86 44
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 4.2 44
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 4.2 44
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 4.2 44
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 1.8 42
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 1.8 42
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 2.2 42
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 1.5 42
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 4.5 42
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 4.5 42
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 3.2 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliQ YP_531401.1 flagellar biosynthesis protein FliQ VFG1260 Protein 0.012 45
fliQ YP_531401.1 flagellar biosynthesis protein FliQ VFG0395 Protein 1e-04 44