Gene Information

Name : fliP (RPC_1515)
Accession : YP_531396.1
Strain : Rhodopseudomonas palustris BisB18
Genome accession: NC_007925
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1652656 - 1653420 bp
Length : 765 bp
Strand : -
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
GTGAGATCGCCGAACACCCCGCGTAGAGTTGTTGCATTCCTCCTCACCCTGATCGCCGCCGGATCGCTCGCCGATCCGGC
GTTGGCGCAGGATATCAGCATCAATCTCGGCGGCGGCCCGGGCGGCGGCGGCGTCACCGAGCGCGCGATCCAGCTGATCG
CGCTGTTGACGGTACTGTCGATCGCGCCGTCGATCCTGATCATGATGACGTCGTTCACCCGGATCGTGGTGGTGCTGTCG
CTGCTGCGCACCGCGCTCGGCACCGCGACCGCGCCGCCGAATTCGGTGATCCTGGCTTTGGCGCTGTTTCTCACCGCCTT
CGTGATGGGGCCGGTGCTGCAGAAATCCTATGACGACGGCATCAAGCCCTTGATCGCCAACCAGATCACCGTCGAGGAGG
CGCTGCAGCGCGCGGTGGTGCCGCTGCGCGGCTTCATGCAGAAGAACGTCCGCGAAAAGGACCTGAAGCTGTTCATGGAC
CTGTCCAACGAGCCGATCCCGGCCACCCCCGACGACCTGTCGCTGCGCATCCTGGTGCCGGCCTTCATGATCTCGGAACT
GAAGCGCGCCTTCGAGATCGGCTTTCTGTTGTTCCTGCCGTTCCTGATCATCGACCTGGTGGTGGCCTCGGTGCTGATGT
CGATGGGCATGATGATGCTGCCGCCGGTGGTGGTGTCGCTGCCGTTCAAGCTGATCTTCTTCGTGTTGGTCGACGGCTGG
TCGCTGGTGGCAGGCTCACTGGTGCAGAGCTACGGGCCCAGTTAG

Protein sequence : 
MRSPNTPRRVVAFLLTLIAAGSLADPALAQDISINLGGGPGGGGVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLS
LLRTALGTATAPPNSVILALALFLTAFVMGPVLQKSYDDGIKPLIANQITVEEALQRAVVPLRGFMQKNVREKDLKLFMD
LSNEPIPATPDDLSLRILVPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGW
SLVAGSLVQSYGPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 9e-29 48
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-27 44
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-27 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 5e-27 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 5e-27 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-27 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-27 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-22 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-21 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_531396.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-50 58
fliP YP_531396.1 flagellar biosynthesis protein FliP VFG2338 Protein 9e-48 57
fliP YP_531396.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-46 54
fliP YP_531396.1 flagellar biosynthesis protein FliP VFG2016 Protein 9e-42 51
fliP YP_531396.1 flagellar biosynthesis protein FliP VFG0188 Protein 7e-30 44
fliP YP_531396.1 flagellar biosynthesis protein FliP VFG0519 Protein 9e-28 43
fliP YP_531396.1 flagellar biosynthesis protein FliP VFG0394 Protein 8e-28 43
fliP YP_531396.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-26 42