Gene Information

Name : RPC_0150 (RPC_0150)
Accession : YP_530044.1
Strain : Rhodopseudomonas palustris BisB18
Genome accession: NC_007925
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator, AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 166679 - 166894 bp
Length : 216 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCGAACCAGATCGTATCATCCGTCTGAAAACTGTCCTTTCCCGGACCGGACTGTCCCGATCCACCATCTACCGCAA
GATCACCGAGGGGACATTCCCGGCCCAGATCAGGATCAGCGTCAACGGCGCAGGCTGGCATGAATCTGAAATCAATCGCT
GGATCGCAGATCCCGTCTCATGGCGTCCGAAACACGAGTTCGATAATGCCCGGTGA

Protein sequence : 
MREPDRIIRLKTVLSRTGLSRSTIYRKITEGTFPAQIRISVNGAGWHESEINRWIADPVSWRPKHEFDNAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAA21398.1 - Not tested HPI Protein 4e-07 44
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 3e-07 44
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 2e-09 44
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 1e-07 42
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 3e-09 42
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 3e-09 42
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 1e-09 42
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 2e-09 42
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 2e-09 42
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 7e-06 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RPC_0150 YP_530044.1 phage transcriptional regulator, AlpA VFG1141 Protein 8e-10 42
RPC_0150 YP_530044.1 phage transcriptional regulator, AlpA VFG1118 Protein 6e-10 42