Gene Information

Name : fliI (RPC_1086)
Accession : YP_530969.1
Strain : Rhodopseudomonas palustris BisB18
Genome accession: NC_007925
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 1192124 - 1193455 bp
Length : 1332 bp
Strand : -
Note : involved in type III protein export during flagellum assembly

DNA sequence :
ATGAACGCGCTTGAACGACTCGAATCCACGCTGGTGGCGCTGCGCCAGGACGTGCCGACGGTGCGGCTTGGCGGCGTCGT
CTCCGAAGTCACCCCGACCTACTATCGGGTGGCGGGCTTGTCACGCTACGTCCGGCTCGGCGAACTGATCGGACTCGACG
TCGACAACCAGATCCAGCTCGGCGAAGTGGTTCGCATCGACGGCACGGGGGTCACCGCCAAGCCGTTCGATTCGCACGTC
GCGGCGGGTCTCGGACTGGTGGCTTATCGCTTGCCGCCGAAAACCCTGTCGCCGCACCCGAGCTGGAAAGGCCGGGTGGT
CAACGCGCTCGGCGAACCGCTCGATGACGCAGGGGTGCTGCAGGCCGGCGAGCGGGTGATGTCGACCGACGCCAATCCGC
CGCCGGCGATGAGCCGCACGCGGGTGCAGGCGCCGCTGCACACCGGGGTGCGCGTCGTCGACCTGTTCACGCCGCTCTGC
ATCGGGCAGCGGATCGGCATCTTTGCAGGGTCCGGCGTCGGCAAGACCACGCTGCTGTCGATGCTGGCGCAGAGCTCGGG
ATTCGACACCGTGGTCACCGCGCTGGTCGGCGAGCGCGGCCGCGAGGTGCGCGAATTTTTGGAAGAGGCGCTGGTCCACC
ATCGCTCCCGGGCGATCACCGTGGTCTCCACCAGCGACGAGAGCCCGATGATGCGGCGGCTCGCCGCCAAGACCGCGACG
ACGATTGCCGAGTACTTCCGCGACCGCGGCGAGTCGGTGCTGTTGATCGTCGATTCGGTCACCCGGTTTGCTCATGCCGC
GCGCGAGGTCGCGCTGGCGACCGGGGAGCCTGCGATCGCGCGCGGTTATGCCCCGAGCGTGTTCAGCGAACTGCCCCGGC
TGCTCGAGCGCTCCGGTCCCGGGCTCGACGGCCAAGGCTCGATCACCGGGATCTTCGCCGTGCTGGTCGACGGCGACGAT
CACAACGAGCCGGTGGCGGACACCGTGCGCAGCACCCTCGACGGCCACATCGTGCTTGATCGCGAGGTGGCGGATCAGGG
GCGCTATCCCGCCATCAACGTGCTGGCGTCGGTGTCGCGGCTGGCGCAACACGTCTGGTCGCCGGAGGAGCGCAATCTGG
TCCGCAAGCTGCGCGCGATGATTGCGCGTTTCGAGGATACCCGCGATCTTCGGCTGATGGGCGGCTATCAGCCCGGCCGC
GACAACGAGCTCGATCAGGCGGTGCAGTTGGTGCCGAAGATTTACGAGGTGATGCAGCAGGCGCCGTCGGATCCGGCGTG
CGGCGAACCGTTCCAGGAACTGCTGGCGGTGATCAAGACCGCGATCGCCTGA

Protein sequence :
MNALERLESTLVALRQDVPTVRLGGVVSEVTPTYYRVAGLSRYVRLGELIGLDVDNQIQLGEVVRIDGTGVTAKPFDSHV
AAGLGLVAYRLPPKTLSPHPSWKGRVVNALGEPLDDAGVLQAGERVMSTDANPPPAMSRTRVQAPLHTGVRVVDLFTPLC
IGQRIGIFAGSGVGKTTLLSMLAQSSGFDTVVTALVGERGREVREFLEEALVHHRSRAITVVSTSDESPMMRRLAAKTAT
TIAEYFRDRGESVLLIVDSVTRFAHAAREVALATGEPAIARGYAPSVFSELPRLLERSGPGLDGQGSITGIFAVLVDGDD
HNEPVADTVRSTLDGHIVLDREVADQGRYPAINVLASVSRLAQHVWSPEERNLVRKLRAMIARFEDTRDLRLMGGYQPGR
DNELDQAVQLVPKIYEVMQQAPSDPACGEPFQELLAVIKTAIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 1e-67 51
lscN AAO18044.1 LscN Virulence TTSS locus Protein 1e-61 47
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 8e-53 46
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 4e-64 45
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 3e-64 45
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 4e-64 45
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-64 45
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-64 45
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 6e-60 45
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 6e-60 45
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-65 45
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-65 45
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 3e-55 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 1e-53 45
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 3e-55 45
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 1e-52 45
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-64 44
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-64 44
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-64 44
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 2e-53 44
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-65 43
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-64 43
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 5e-64 43
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 7e-64 43
invC AAS66861.1 InvC Not tested SSR-2 Protein 8e-52 43
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 2e-49 43
unnamed AAL06369.1 EscN Virulence LEE Protein 1e-58 42
escN AAC31513.1 L0034 Virulence LEE Protein 4e-59 42
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 4e-59 42
escN AAC38383.1 EscN Virulence LEE Protein 3e-59 42
escN NP_290268.1 hypothetical protein Virulence LEE Protein 5e-59 42
ECs4568 NP_312595.1 EscN Virulence LEE Protein 5e-59 42
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 8e-58 42
escN YP_003236088.1 translocator EscN Virulence LEE Protein 2e-59 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_530969.1 flagellum-specific ATP synthase VFG0048 Protein 5e-69 48
fliI YP_530969.1 flagellum-specific ATP synthase VFG2144 Protein 4e-65 47
fliI YP_530969.1 flagellum-specific ATP synthase VFG0192 Protein 2e-62 47
fliI YP_530969.1 flagellum-specific ATP synthase VFG0515 Protein 2e-64 45
fliI YP_530969.1 flagellum-specific ATP synthase VFG2331 Protein 3e-65 43
fliI YP_530969.1 flagellum-specific ATP synthase VFG0812 Protein 2e-59 42
fliI YP_530969.1 flagellum-specific ATP synthase VFG0730 Protein 2e-59 42
fliI YP_530969.1 flagellum-specific ATP synthase VFG1254 Protein 4e-64 42