|
Name : Sde_3541 (Sde_3541) Accession : YP_529008.1 Strain : Saccharophagus degradans 2-40 Genome accession: NC_007912 Putative virulence/resistance : Unknown Product : RNA binding S1 Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 4498131 - 4500449 bp Length : 2319 bp Strand : - Note : - DNA sequence : ATGCAGCAAATTTACAATCGTATTGCCGATGAACTCAATGTACAGCAGCGACAGGTTGAGGCCGCGGTGGCCCTGCTTGA TGAAGGCTCTACCGTGCCTTTTATTTCGCGTTACCGCAAAGAGGTTACCGGCGGGCTAGACGATACTCAGCTGCGTAACT TAGAAGAGCGCTTAACCTACCTGCGCGAGATGGAAGACCGCCGCGACACCATTCTTAAATCCATCGCTGAGCAAGAAAAA CTCACCCCCGAGTTAGAGCAGCAAATTAAAGGTGCCGAGACAAAAACACAGTTAGAAGATTTATACCTGCCCTACAAACC CAAGCGTCGCACCAAAGCGCAAATTGCTCGCGAAGCAGGGTTAGAGCCATTAGCCGATGCTCTGTTGGCCAACCCAAGCC TGGTGCCAGAAACCGAAGCGCAAGCCTACTTTAACGAAGAGCATAAAATTACCGATATTAAGTCGGCGCTTGATGGCGCT AAGCAGATTTTGATGGAGCGTTTTAGTGAAGATGCCGTTCTGCTTAACAAGATGCGTCAATTCCTAAAGCAAGAAGGTTA TATAAGTGCTGCCGTGGTTGAGGGCAAAGAGGCTGAGGGCGCGAAATTCCAAGATTATTTTGAGCACAAAGAGCCGTTGG CCAATACCCCTTCGCACCGCGCACTGGCTATGTTCCGCGGCCGCAATGAAGGCGTGCTTACGATGGTGCTTACCTTAGAT AATGAGCTAGAGCCAGGTCAGCGTCACCCGTGTGAGACTATGGTTGCCTCTCACTGGCAAATAGAAGACCAAGGCCGCCC TGCGGATGCATGGCTTGCCGAAGTGGTGCGTTGGACTTGGCGAGTAAAATTAAGCACGCACTTAGAAACAGACTTATTTA GTGAATTGCGCGAGCGTGCAGAGGCGGATGCTATTGATGTATTTGCCCACAACCTAAAAGACTTGTTGCTTGCAGCTCCT GCAGGGCAAAAAGTGACTATTGGTTTAGACCCTGGTTTGCGCACGGGTGTAAAACTGGCGGTTGTTGGCGCTACCGGTGA AATATTAGATCACGGTGCTATATTCCCTACACCTCCGCAAAACCGCATCGCCGAAGCAGAAGCTGTGATTGTGGCTTTAT GTAAAAAACATAACGTGGGCTTAATTGCGATTGGTAACGGTACTGCTAGCCGCGAGACCGATAAATTTGTGGGGGATTTA CTTAAAAAGCACAAAGATATTAAAGCGCAAAAAGTAATGGTGAACGAGGCGGGTGCGTCGGTTTACTCTGCATCTGAGTT TGCTGCGAAAGAATTCCCAGATTTGGATGTTACGATTCGCGGCGCTATTTCCATTGCTCGTCGTCTGCAAGACCCGCTAG CCGAGCTTGTGAAAATTGACCCTAAATCGATTGGTGTGGGCCAGTACCAGCACGATGTATCACAAAGCCGTTTGGCTAAG TCGCTAGATGCCGTAGTAGAAGATTGTGTGAACGGTGTGGGGGTGGAAATCAACACCGCTTCGGCGCCACTATTGGCGCG GGTGTCGGGCCTAAGCTCTTCTATCGCCAACAATATTGTGGAGTTCCGCCACAAAAACGGTGGTTTTAAAAGCCGTGAGC AACTCAAAGAAGTAAGTCGCTTGGGGGCCAAAGCGTTTGAGCAGGCTGCCGGCTTCTTGCGTATTGCTGGGGCAGAAAAC CCATTGGATGCCTCTGGTGTTCACCCCGAGTCGTATACGGTGGTAGAGCAAATCGCCGCGAAAAACCAACGCGAATTGCG CGGTTTAATTGGCGATGCGGGCTTTTTACGCAGTCTAAAACCTGCAGAGTACACCAACGAGCAATTTGGTTTACCTACGG TGACCGATATTATTGCCGAGCTAGAAAAACCCGGTCGCGATCCGCGCCCAGAGTTTAAAACGGCGCAATTCCAAGATGGT GTTGAAACCATAAAAGATTTGGAGCCGGGTATGATTTTGGAAGGCACGGTAACTAACGTGACTAACTTCGGCGCGTTTGT CGATGTAGGTGTGCATCAAGATGGTTTGGTACATATTTCTGCACTTTCAAACACTTTTGTTAAAGACCCCCGCGAAGTGG TAAAAGCCGGCGACATTGTGAAAGTTAAAGTGATGGAAGTGGATGTGCCGCGCAAGCGAATCGCCATGTCTATGCGTATG GACGATGAGCCAGGTGAAAAGGTAACAGGTCGCCCAGCTGGCGGAGCCGGTGGTCAGGGCGCGAAACAGGCGCGTCGTCA CAACACCAAACAGCAAGCTGCTCAGCCTTCAGGCACCATGGCAGCACTGTTTCAGCAGGCGCTTAACAAGAAAAAGTAA Protein sequence : MQQIYNRIADELNVQQRQVEAAVALLDEGSTVPFISRYRKEVTGGLDDTQLRNLEERLTYLREMEDRRDTILKSIAEQEK LTPELEQQIKGAETKTQLEDLYLPYKPKRRTKAQIAREAGLEPLADALLANPSLVPETEAQAYFNEEHKITDIKSALDGA KQILMERFSEDAVLLNKMRQFLKQEGYISAAVVEGKEAEGAKFQDYFEHKEPLANTPSHRALAMFRGRNEGVLTMVLTLD NELEPGQRHPCETMVASHWQIEDQGRPADAWLAEVVRWTWRVKLSTHLETDLFSELRERAEADAIDVFAHNLKDLLLAAP AGQKVTIGLDPGLRTGVKLAVVGATGEILDHGAIFPTPPQNRIAEAEAVIVALCKKHNVGLIAIGNGTASRETDKFVGDL LKKHKDIKAQKVMVNEAGASVYSASEFAAKEFPDLDVTIRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQSRLAK SLDAVVEDCVNGVGVEINTASAPLLARVSGLSSSIANNIVEFRHKNGGFKSREQLKEVSRLGAKAFEQAAGFLRIAGAEN PLDASGVHPESYTVVEQIAAKNQRELRGLIGDAGFLRSLKPAEYTNEQFGLPTVTDIIAELEKPGRDPRPEFKTAQFQDG VETIKDLEPGMILEGTVTNVTNFGAFVDVGVHQDGLVHISALSNTFVKDPREVVKAGDIVKVKVMEVDVPRKRIAMSMRM DDEPGEKVTGRPAGGAGGQGAKQARRHNTKQQAAQPSGTMAALFQQALNKKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 0.0 | 62 |
