Gene Information

Name : ribD (Sde_3458)
Accession : YP_528925.1
Strain : Saccharophagus degradans 2-40
Genome accession: NC_007912
Putative virulence/resistance : Unknown
Product : diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0117
EC number : 3.5.4.26
Position : 4398792 - 4399889 bp
Length : 1098 bp
Strand : -
Note : Diaminohydroxyphosphoribosylaminopyrimidine deaminase, 5-amino-6-(5-phosphoribosylamino)uracil reductase

DNA sequence : 
ATGTCTAATTATTCAGTTGCTGACCAACGCTTTATGACGCGCGCAATGCAACTTGCTCGCGAAGGCACTTACACCACAAC
CCCTAATCCACGGGTGGGCTGTGTGTTGGTGGATGCAGCGAATAACATTGTGGGCGAGGGCTACCACGTGCGCGCCGGCG
AAGGTCACGCAGAGGTCAACGCCATTGCCGATGCTGGCGCTGCCGCACGCGGAACAACAGCTTATGTCACCCTAGAGCCG
TGTAGTCACACCGGTAAAACCGGCCCCTGCTGCGAAGCGTTAGTTGCGGCAGGTGTAAGCCGCGTTGTGTATGGCATGGA
AGACCCCAACCCCAAAGTGGCGGGCAGGGGCTTAGATCACCTCGAAGCCGCAGGCATTCAAGTAGATGGGCCGGTGCTAG
AATACGATGCCTACGAGCTTAACCCTGGTTTTATAAAGCGCATGCGTCAAGGCTTGCCGTTAATTCGCATCAAAATGGCA
ATGAGCTTAGATGGCCGCACCGCAATGGCCGACGGCACCAGCAAGTGGATTACCAGCCCCAGGGCGCGCGACGATGTACA
GCGTTTGCGCGCGCGCAGTTGCGCTCTTATTACAGGTGTAGACTCGGTTTTGTTGGACGACCCATCGCTAACCGTGCGCC
TGTCGGACGATGCCCGCCAACCATTGCGGGTAATTGTAGATAGTAAGTTGCGCCTACCTAAAGATGCCGCCATTCTTAGC
CAGCCTGGTAAAACCGTCATCGCTACCTGTGCTAATGTAAATCAAGCACAAAGCCCCTATGGCGACACCGAAATTTGGAC
GCTGCCCGAAAAAGACGGCCGTGTTAGCCTGCAAGCCCTAGCGCGCAAGTTAGCGCAGCAAGAGTGCAATGAAGTATTGG
TAGAAACTGGCGCAACTCTGGCCGGTGCATTTGTATCCAGTGGGCTAGTGGATGAGCTTGTTATTTACATGGCAGGCAAA
CTATTGGGCAGTACCGCCCGTCCGTTGTTTGATATACCCATCAGCAAAATGAGCGCCCAATTGCCGTTATCTATTACCGA
TATTCGTGCAATTGGCGATAACTGGCGTATTACCGCCATTCCAGACCCAGAAGGTTAG

Protein sequence : 
MSNYSVADQRFMTRAMQLAREGTYTTTPNPRVGCVLVDAANNIVGEGYHVRAGEGHAEVNAIADAGAAARGTTAYVTLEP
CSHTGKTGPCCEALVAAGVSRVVYGMEDPNPKVAGRGLDHLEAAGIQVDGPVLEYDAYELNPGFIKRMRQGLPLIRIKMA
MSLDGRTAMADGTSKWITSPRARDDVQRLRARSCALITGVDSVLLDDPSLTVRLSDDARQPLRVIVDSKLRLPKDAAILS
QPGKTVIATCANVNQAQSPYGDTEIWTLPEKDGRVSLQALARKLAQQECNEVLVETGATLAGAFVSSGLVDELVIYMAGK
LLGSTARPLFDIPISKMSAQLPLSITDIRAIGDNWRITAIPDPEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 6e-55 45
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 6e-55 45