Gene Information

Name : Sde_3399 (Sde_3399)
Accession : YP_528866.1
Strain : Saccharophagus degradans 2-40
Genome accession: NC_007912
Putative virulence/resistance : Virulence
Product : AMP-dependent synthetase and ligase
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG1021
EC number : -
Position : 4333679 - 4335370 bp
Length : 1692 bp
Strand : -
Note : -

DNA sequence : 
ATGTGTAAGCAAGCCGTTTCTTCTTCCAGTAATTTATTTACGCCGTGGCCAGAAGCCGAAGCAAACCGCTATCGCACTTT
AGGCCTATGGCTTAATAAAAATATGTTTCACATTCTAAGCGACAGTCGCGTAGCAGATAAGCTTGCAGTCATTGACGATA
ACAAACAGCTTACCTACGGCCAATTAAAAACTAATAGTTTGGCGTTGGCCCAAGGCCTGTATCAGTTGGGTATTCGCACG
GGCGATAACGTTGTATTGCAATTCCCCAACCGAATTGAATTTGTAGAAACACTGTTTGCTTTATTTGCGCTAGGAGCCGT
GCCCGTAATGGCATTGCCGGCGCATAGAGAGCAAGAGCTGAAACATTTTTGTACCGAGTCGCAAGCGGTTGCTTATATTT
GCGCCGATCATGCAGGCGGATTTGATTACCGTGCGCTGGCACGCAACGTGTGTGCATTAACGCAACTCAAGCATGTGTTT
GTAGCCGGCGATGGGCAAGAGTTTTATTCACTAGACGATGTAAAACGCGCTGGTGAACTGGGTGCTAAAAGTAAGGCTTC
GTTGCCGGTAGTGGATAACGGCCAAAGCTTAGCGTTACTACAGCTTTCTGGTGGTACCACCAATTTGCCTAAATTAATTC
CGCGTACACACGACGACTATTTTTATAGCGTGCGCGAAAGCGCTGCAGTTACAGGTTTAACCAACGAATCTGTTTACCTG
TGCGTGCTGCCGGCAGCGCATAACTTTACTTTAAGTTCTGCTGGCGTATTGGGTGCGCTATATGCCGGCGCAACGGTCAT
TTTAAGTGAGCAAGTGGCGCCAGATAGGGTGCTGCCTATTATCGCCAAACAGCGTGTTACTACCGTGGCGCTGGTGCCGC
CTTTGGCTAATGCTTGGCTGCAGTTTGCACAAAAAAATAGAGTGGATACCAATAGTTTGCAAGTGGTGCAAGTTGGCGGC
GCAAAATTAACCAGTGTGCTGGCTAAGCAAATAGTGGCCATTTTTAACTGCAAGCTACAGCAAGTTTTTGGTATGGCCGA
AGGTTTAGTTAATTACACCCGTTTACACGATGGCCCAGACAAAACCCTGTTTACCCAAGGGTGCCCGCTTTCGAGTGAAG
ACGAAATAAAAGTTGTTGCTAACGACGATACGCCAGTGGTTAATGGCGAGGTAGGGCATTTGCTCACCCGCGGGCCTTAC
ACCATTCGCGGCTACTACAACGCGTCCGAGCACAATGCTACGGCTTTTACTCCCGATGGTTTTTACCGCACAGGCGACCT
AGTGCGGTTAACCGAAGAGGGTTACGTCGTTGTAGAGGGTAGGGCAAAAGACCAAATAAATCGCGGCGGTGAAAAAATAT
CTGCAGCCGAGCTTGAGGAGTTGCTCGTGGGGCATCCGGGCATATCAGATGCTGCCGTGGTAGCGATGAAAGATTCCGTA
CTGGGTGAAAAGACCTGTGCATTTGTAATTAAGAATAAGCAGCAGGCATACCCACAAGGTGTTAATGCAATTTCTAATCA
ACAAGCAATAACGCTACCGGCGCTGCGGCGCTATCTGCGAGAAATTGGTGTTGCTGAATATAAGCTACCCGACAGGGTGG
TGTGTGTAGAAGTATTTCCAACCACCAAGTTCGGCAAGGTTAGTAAAAAAGCCTTGCGCGAAACGCTGGAAAATATTCAG
CAGCTAGCTTGA

Protein sequence : 
MCKQAVSSSSNLFTPWPEAEANRYRTLGLWLNKNMFHILSDSRVADKLAVIDDNKQLTYGQLKTNSLALAQGLYQLGIRT
GDNVVLQFPNRIEFVETLFALFALGAVPVMALPAHREQELKHFCTESQAVAYICADHAGGFDYRALARNVCALTQLKHVF
VAGDGQEFYSLDDVKRAGELGAKSKASLPVVDNGQSLALLQLSGGTTNLPKLIPRTHDDYFYSVRESAAVTGLTNESVYL
CVLPAAHNFTLSSAGVLGALYAGATVILSEQVAPDRVLPIIAKQRVTTVALVPPLANAWLQFAQKNRVDTNSLQVVQVGG
AKLTSVLAKQIVAIFNCKLQQVFGMAEGLVNYTRLHDGPDKTLFTQGCPLSSEDEIKVVANDDTPVVNGEVGHLLTRGPY
TIRGYYNASEHNATAFTPDGFYRTGDLVRLTEEGYVVVEGRAKDQINRGGEKISAAELEELLVGHPGISDAAVVAMKDSV
LGEKTCAFVIKNKQQAYPQGVNAISNQQAITLPALRRYLREIGVAEYKLPDRVVCVEVFPTTKFGKVSKKALRETLENIQ
QLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
irp5 CAA73130.1 Irp5 protein Virulence HPI Protein 1e-97 44
irp5 YP_001006819.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 2e-97 44
ybtE AAA93464.1 yersiniabactin 2,3-dihydoxybenzoate-AMP ligase Virulence HPI Protein 1e-98 44
ybtE YP_853079.1 yersiniabactin siderophore biosynthetic protein Virulence PAI IV APEC-O1 Protein 2e-98 44
irp5 YP_002346898.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 2e-98 44
ybtE NP_669710.1 salicyl-AMP ligase Virulence HPI Protein 2e-98 44
ybtE NP_993003.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 2e-98 44
ybtE YP_070120.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 2e-98 44
ybtE CAA21394.1 - Virulence HPI Protein 2e-98 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sde_3399 YP_528866.1 AMP-dependent synthetase and ligase VFG0168 Protein 2e-111 48
Sde_3399 YP_528866.1 AMP-dependent synthetase and ligase VFG1817 Protein 7e-97 44
Sde_3399 YP_528866.1 AMP-dependent synthetase and ligase VFG0932 Protein 3e-104 43