Gene Information

Name : Sde_3375 (Sde_3375)
Accession : YP_528842.1
Strain : Saccharophagus degradans 2-40
Genome accession: NC_007912
Putative virulence/resistance : Virulence
Product : Two-component response regulator CbrB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 4303536 - 4304954 bp
Length : 1419 bp
Strand : +
Note : -

DNA sequence : 
GTGAGTAAAATACTGATCGTAGAAGACGAAGTGATTATTCGCACAGCGCTGCGCAAGCTGCTTACGCGCAATAAACACGA
CGTAAAAGAAGCTGGATCGATCAGCGAGGCAACAAGCAAGCACAAACTCGATACCTTCGACCTCATCATCAGCGACCTGC
GCCTTCCCGGCGCCCCCGGCACAGACCTTATTCAGCTAGCTGGCGACATTCCCGTATTAATCATGACCAGTTACGCCAGC
CTGCGCTCGGCCGTAGATTCTATGCGCATGGGCGCCGTAGACTACATAGCCAAGCCATTCGACCACGACGAAATGCTGGC
CGCCGTTAAGCGCGTACTGGGTAAATCGGCCACCCGCTTAGCCCAAACCAATACCGGCAAGGTAGAAAACACCTCGGCAA
TTGAAGGCATGATTGGCACCAGCGCAGCCATTAAAGAAATTTACGGCAAAATACACAAAGTCGCCCCAACCAATGCCACA
GTACTGGTATTAGGTGAAACAGGTACGGGTAAAGAGCTAGTGGCCAACGCTATTCACCGCGAAAGCCCGCGCAAAGACAA
ACCGCTTATATCGGTAAACTGCGCCGCTATTCCAGAAACCCTTATCGAAGCCGAGCTATTTGGCCACGAAAAAGGCGCCT
TTACCGGCGCAGCCACCACCCGCGAAGGTTTGGTTTCGGCCGCCGATGGCGGTACATTGTTTTTAGATGAGATTGGCGAA
TTGCCACTCGAAGCACAGGCGCGCTTACTGCGCGTACTGCAAGAAGGTGAAGTGCGCCCAATTGGCTCGATAGAGTCGCG
CAAAGTGGATGTTCGCCTAGTGGCGGCAACACACCGCGATTTGGGCCGCTTGGCCCGCGAAGGTAAATTCCGCGAGGATT
TATACTTCCGTATTAACGTTGTACAAATTAAGTTACCGCCCCTACGCGAGCGCGGCAAAGACATACTCGCACTGGCCGAG
ACCTTTGTTAAACGCTACTGCGTAGAAATGTTAAAACCGCACCTAACCCTCACCCCAGAGGCCATTCAGGCTATTACCAC
GTACACTTGGCCGGGCAATATTCGCGAGTTAGAAAACGCGATCCAAAGAGCAGTTATTTTGTGCGACGACGAAGTGGAAA
TCGATCATACCCACTTATCGATAGATTTAGACCTAATTCGCGTAGACGAATACCGCGAACAGCAATACGCCCCAGAACCA
CAGCGCAATCAGCAGCACAACACCTCGGCCAAACCCGACCCCAACGAAGACCTCTCTCTCGAAGACTACTTCCAACGCTT
CGTCCTCGAACATCAAGACACCATGAGCGAAACCGAATTGGCGCGTAAATTAGGCGTTAGTCGCAAATGCTTGTGGGAAC
GTCGCCAGCGTCTGGGTATCCCCCGCAAAAAGCCTACCCAGTCGGCAACAACCGACTAA

Protein sequence : 
MSKILIVEDEVIIRTALRKLLTRNKHDVKEAGSISEATSKHKLDTFDLIISDLRLPGAPGTDLIQLAGDIPVLIMTSYAS
LRSAVDSMRMGAVDYIAKPFDHDEMLAAVKRVLGKSATRLAQTNTGKVENTSAIEGMIGTSAAIKEIYGKIHKVAPTNAT
VLVLGETGTGKELVANAIHRESPRKDKPLISVNCAAIPETLIEAELFGHEKGAFTGAATTREGLVSAADGGTLFLDEIGE
LPLEAQARLLRVLQEGEVRPIGSIESRKVDVRLVAATHRDLGRLAREGKFREDLYFRINVVQIKLPPLRERGKDILALAE
TFVKRYCVEMLKPHLTLTPEAIQAITTYTWPGNIRELENAIQRAVILCDDEVEIDHTHLSIDLDLIRVDEYREQQYAPEP
QRNQQHNTSAKPDPNEDLSLEDYFQRFVLEHQDTMSETELARKLGVSRKCLWERRQRLGIPRKKPTQSATTD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 5e-67 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 5e-67 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sde_3375 YP_528842.1 Two-component response regulator CbrB BAC0467 Protein 8e-76 47
Sde_3375 YP_528842.1 Two-component response regulator CbrB BAC0089 Protein 3e-76 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sde_3375 YP_528842.1 Two-component response regulator CbrB VFG0116 Protein 3e-67 43
Sde_3375 YP_528842.1 Two-component response regulator CbrB VFG1249 Protein 1e-69 43
Sde_3375 YP_528842.1 Two-component response regulator CbrB VFG1214 Protein 1e-70 42